BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_N14 (592 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 172 3e-44 SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 172 3e-44 SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.38 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.51 SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.2 SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3 >SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosaccharomyces pombe|chr 3|||Manual Length = 193 Score = 172 bits (419), Expect = 3e-44 Identities = 76/152 (50%), Positives = 106/152 (69%) Frame = +3 Query: 69 RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248 ++ L +++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK Sbjct: 7 QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKT 66 Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428 A+ GRH G+GKR+GTA ARMP +W + KID+HLYH+LY++ Sbjct: 67 HAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126 Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524 A GN F +KR L+E+I R KA+ T ++ +Q Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158 >SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosaccharomyces pombe|chr 2|||Manual Length = 193 Score = 172 bits (419), Expect = 3e-44 Identities = 76/152 (50%), Positives = 106/152 (69%) Frame = +3 Query: 69 RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248 ++ L +++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK Sbjct: 7 QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKT 66 Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428 A+ GRH G+GKR+GTA ARMP +W + KID+HLYH+LY++ Sbjct: 67 HAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126 Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524 A GN F +KR L+E+I R KA+ T ++ +Q Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158 >SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 29.5 bits (63), Expect = 0.38 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 Query: 253 SVFLRTRAREWTATGFLMTRPSLIILRMFC 164 S F T REWT L T +++R FC Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 29.1 bits (62), Expect = 0.51 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -3 Query: 194 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 105 +I +H++DV G+ V LI+ + I+P +LF Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 25.4 bits (53), Expect = 6.2 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +3 Query: 165 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARXKGRHCG 281 +++R +KD + +PV+V S A ++T G G Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179 >SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 25.0 bits (52), Expect = 8.3 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -2 Query: 132 HLDPTTPSFYHIA*AEAASLFCSLRELILS-SGEIQRTQERIN 7 HLD P Y I +A+ L C++ + S S E++R+ ++N Sbjct: 23 HLDSCFPLRYIIGRKKASKLLCTMDSGLKSDSHEVERSNFQLN 65 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,228,630 Number of Sequences: 5004 Number of extensions: 41695 Number of successful extensions: 122 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 256184654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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