Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N14
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   172   3e-44
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   172   3e-44
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.38 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.51 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.2  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   8.3  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  172 bits (419), Expect = 3e-44
 Identities = 76/152 (50%), Positives = 106/152 (69%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+RK 
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKT 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
             A+  GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
           A GN F +KR L+E+I R KA+   T ++ +Q
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  172 bits (419), Expect = 3e-44
 Identities = 76/152 (50%), Positives = 106/152 (69%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+RK 
Sbjct: 7   QKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKT 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
             A+  GRH G+GKR+GTA ARMP   +W                + KID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
           A GN F +KR L+E+I R KA+   T ++ +Q
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 253 SVFLRTRAREWTATGFLMTRPSLIILRMFC 164
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 194 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 105
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 165 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARXKGRHCG 281
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 132 HLDPTTPSFYHIA*AEAASLFCSLRELILS-SGEIQRTQERIN 7
           HLD   P  Y I   +A+ L C++   + S S E++R+  ++N
Sbjct: 23  HLDSCFPLRYIIGRKKASKLLCTMDSGLKSDSHEVERSNFQLN 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,630
Number of Sequences: 5004
Number of extensions: 41695
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)