Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N14
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 184 5e-47
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 184 5e-47
04_04_1687 - 35365766-35366356,35367137-35368135 29 3.7
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.7
04_03_0266 + 13648287-13649099,13649186-13649524 28 4.8
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 6.4
02_05_0067 + 25557975-25558553 28 6.4
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 28 6.4
06_03_0756 + 24244313-24244999 27 8.5
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 184 bits (448), Expect = 5e-47
Identities = 83/152 (54%), Positives = 105/152 (69%)
Frame = +3
Query: 69 RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
++ L +++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+
Sbjct: 7 QKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRA 66
Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
EA+ KGRH G+GKRRGT AR+P K LW A KID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
GN+F NKRVLME IH+ KA+ A LSDQ
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 184 bits (448), Expect = 5e-47
Identities = 83/152 (54%), Positives = 105/152 (69%)
Frame = +3
Query: 69 RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
++ L +++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+
Sbjct: 7 QKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRA 66
Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
EA+ KGRH G+GKRRGT AR+P K LW A KID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
GN+F NKRVLME IH+ KA+ A LSDQ
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 200 HQETCSSPLPRPCPQKHR 253
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 135 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARXKGRHCGFGKRRGTAN 308
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 105 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 251
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 120 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 224
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 459 HACX*THYRSPSCRVSGIDACQSXW 385
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 105 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARXK 266
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
>06_03_0756 + 24244313-24244999
Length = 228
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 106 LPHRISRGCKPLLQLEGTHPEQR*DPTHTRKN 11
LPH +R PL QL+G HP HTR +
Sbjct: 159 LPHHCAR--LPLQQLQGRHPAPASPKCHTRSS 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,024
Number of Sequences: 37544
Number of extensions: 321125
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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