Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N14
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              210   6e-55
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            30   1.2  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             29   2.8  
SB_1071| Best HMM Match : Ras (HMM E-Value=0)                          27   8.7  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  210 bits (513), Expect = 6e-55
 Identities = 97/152 (63%), Positives = 113/152 (74%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   L++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSRARVRK 
Sbjct: 35  QKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRARVRKA 94

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
            EAR KGRH G GKR+GTANARMP K +W                A KID H+YHSLYMK
Sbjct: 95  DEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMK 154

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
           + GNVF NKRVLMEYIH+ KA+ A + +LSDQ
Sbjct: 155 SKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQ 186


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7    INSFLC-ALDLTAAQDEFP-QAAEEACSLCLCDVVKRRCG 120
            I S +C  L + A +D  P Q+    C +C  DVV RRCG
Sbjct: 1397 IQSAVCKVLGMPAKKDHTPNQSPIFVCPVCSVDVVTRRCG 1436


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +1

Query: 19  LCALDLTAAQDEFPQAAEEACSLCLCDVVKRRCGWIQMKSMRSQ 150
           L  LD+ ++ DEF Q  +E  S C C VVK R   I++K  R Q
Sbjct: 653 LSELDVESSDDEFLQPKQENKSAC-CRVVKGRP--IEVKPFRDQ 693


>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
          Length = 228

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 126 DPTTPSFYHIA*AEAASLFCSLRELILSSGE 34
           DPT   FYH A  E    F S+R+L + +G+
Sbjct: 33  DPTIEDFYHTAGTEQ---FASMRDLYIKNGQ 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,483
Number of Sequences: 59808
Number of extensions: 363380
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)