Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N14
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   176   1e-44
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   4.3  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    27   7.5  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  176 bits (428), Expect = 1e-44
 Identities = 78/152 (51%), Positives = 104/152 (68%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR R R+ 
Sbjct: 7   QKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREY 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
            EAR KGRH G+GKRRGTANARMP K LW                A K+D+HLYH LY++
Sbjct: 67  EEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLR 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
           A GN F NK+ L+EYI + K +      L+DQ
Sbjct: 127 AKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 159 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARXKGR 272
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 24   CVGSHRCSG*VPSSCRRGLQPLLM-RCGKKKVWLDPNEI-NEIANT--NSRQNIRK 179
            C GS  C   V   C  G++ L   +C K + W+DPN   NEI  T  NS++ + K
Sbjct: 888  CKGSVGCEP-VKCGCADGMKVLKNGKCVKDEEWVDPNACDNEIEFTCLNSKKCVPK 942


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 208 FLMTRPSLIILRMFCLELVFAISLISFGSNHTFFLPHRISRGCK 77
           F+ T   +I +  F L  V    ++ +G N T  + H+ + GC+
Sbjct: 634 FIKTHIVVIAIIFFTLIFVGIYKIVKYGENFTEKVTHKTAGGCR 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,392
Number of Sequences: 27780
Number of extensions: 254145
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)