Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N14
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   177   5e-45
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   176   1e-44
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   175   1e-44
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    37   0.012
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   5.4  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    28   5.4  
At3g60850.1 68416.m06807 expressed protein                             27   9.4  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  177 bits (431), Expect = 5e-45
 Identities = 80/152 (52%), Positives = 102/152 (67%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +M+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR+R R  
Sbjct: 7   QKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARAL 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
            EA+ KGRH G+GKR+GT  AR+P K LW                + KIDRH+YH +YMK
Sbjct: 67  NEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMK 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
             GNVF NKRVLME IH+ KA+ A    L+DQ
Sbjct: 127 VKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  176 bits (428), Expect = 1e-44
 Identities = 79/152 (51%), Positives = 103/152 (67%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R R+ 
Sbjct: 7   QKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQL 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
             A+ KGRH G+GKR+GT  AR+P K LW                  KIDRH+YH +YMK
Sbjct: 67  NIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMK 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
             GNVF NKRVLME IH+ KA+ A    LSDQ
Sbjct: 127 VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  175 bits (427), Expect = 1e-44
 Identities = 79/152 (51%), Positives = 102/152 (67%)
 Frame = +3

Query: 69  RRGLQPLLMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKN 248
           ++ L   +M+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R RK 
Sbjct: 7   QKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKM 66

Query: 249 TEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXXXTAXKIDRHLYHSLYMK 428
             A+ KGRH G+GKR+GT  AR+P K LW                  KID+H+YH +YM+
Sbjct: 67  KIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMR 126

Query: 429 ANGNVFXNKRVLMEYIHRXKADXAXTXMLSDQ 524
             GNVF NKRVLME IH+ KA+ A    LSDQ
Sbjct: 127 VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 390 KIDRHLY-HSLYMKANGNVFXNKRVLMEYIHR 482
           KID+ +Y H ++MK  G V+ NK VLME +H+
Sbjct: 30  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHK 61


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 211 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 116
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 189 DGLVIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGT 302
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 57  PSSCRRGLQPLLMRCGKKKVWLDPNEI--NEIANTNSRQNIRKMIKDGLVIKKPVAV 221
           PS C    + LL    K + WL  N+   N I N+   +  + M  DG  I+  V +
Sbjct: 552 PSDCTNQKEDLLSETCKPEKWLKCNDFDENSILNSEDSKLTKPMSHDGGSIETDVGL 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,030
Number of Sequences: 28952
Number of extensions: 238691
Number of successful extensions: 518
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)