Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N12
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    38   9e-05
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.076
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.31 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.6  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   6.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 37.5 bits (83), Expect = 9e-05
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 9/57 (15%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQI 644
           GRD+++ AQ+G+GKTA F + I+  +         + +  +   +I++PTRELA QI
Sbjct: 195 GRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQI 251



 Score = 28.3 bits (60), Expect = 0.058
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           + +F+   L+  LL  +   G+ KP+AIQ+ AI
Sbjct: 157 ITSFETSGLRPHLLENVKKSGYTKPTAIQKYAI 189


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.9 bits (59), Expect = 0.076
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
 Frame = +2

Query: 236  YCG*NMSYSSERRSXDWP-----EDSKNGPSKDQGSYDGP--PGMDPGTLDTDWDQVVET 394
            YC   + ++ ER+  DWP     E+ K G      S+  P  P   P +    W     T
Sbjct: 1130 YCAGGLHWNKERKICDWPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTT 1189


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 215 ASSFPFSYCG*NMSYSSERRSXDWPEDSKNGPSKDQGSYDGPP 343
           +SS PFS  G  +S S  +R+ DW   S +G         GPP
Sbjct: 83  SSSGPFSSIGGGISASKRQRTDDW-LSSPSGNVPPLTPSPGPP 124


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 239 CG*NMSYSSERRSXDWPEDSKNGPSKDQGSYDGPPGMDP 355
           C   + Y+    S DWPE + +G  K     D P G  P
Sbjct: 128 CIGGLLYNERTHSCDWPE-NVDGCQKHPLCNDDPNGNVP 165


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 537 QFLTGLER*HRVXWMQGIIARCWIAE 460
           QF+  L    RV WM  +I   W+ +
Sbjct: 118 QFIVKLPSAERVAWMWCLIFAFWVPQ 143


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 537 QFLTGLER*HRVXWMQGIIARCWIAE 460
           QF+  L    RV WM  +I   W+ +
Sbjct: 118 QFIVKLPSAERVAWMWCLIFAFWVPQ 143


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 537 QFLTGLER*HRVXWMQGIIARCWIAE 460
           QF+  L    RV WM  +I   W+ +
Sbjct: 118 QFIVKLPSAERVAWMWCLIFAFWVPQ 143


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 537 QFLTGLER*HRVXWMQGIIARCWIAE 460
           QF+  L    RV WM  +I   W+ +
Sbjct: 118 QFIVKLPSAERVAWMWCLIFAFWVPQ 143


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 347 FPEVHRNYLDPSMAHFW 297
           F +V R+Y DP   ++W
Sbjct: 141 FVKVPRHYDDPGKGNYW 157


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 418 FFEVHVIEGFDNLIPVGVKCPRVHSRRSIVTTLILRW 308
           FF+ ++I G +N + + V    + +  + +T  +L W
Sbjct: 43  FFKKNLIVGSENCLVLNVYTKNLRTDTNRITQPVLFW 79


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 239  CG*NMSYSSERRSXDWPED 295
            C  N+ ++ ++   DWPE+
Sbjct: 947  CPSNLVFNPDQNVCDWPEN 965


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 321 KVVTMDLREWTLGHLT 368
           KV T  LR W   HLT
Sbjct: 187 KVATNILRAWLFQHLT 202


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 321 KVVTMDLREWTLGHLT 368
           KV T  LR W   HLT
Sbjct: 343 KVATNILRAWLFQHLT 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,581
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)