Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N12
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 88 9e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 81 1e-16
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 1e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 60 3e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 1e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 52 7e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 4e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 6e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 1e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 8e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 8e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 4e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 7e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 7e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 38 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 35 0.012
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.035
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.082
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 1.8
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 4.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.4
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 7.1
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 88.2 bits (209), Expect = 9e-19
Identities = 41/47 (87%), Positives = 47/47 (100%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQI
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQI 103
Score = 79.8 bits (188), Expect = 3e-16
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = +2
Query: 347 MDPGTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
++ ++T++D+V++TFDDMNLK LLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 81.0 bits (191), Expect = 1e-16
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/48 (58%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +2
Query: 347 MDPGTLDTDWD-QVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIM 487
M+ L T D V +F++MNLKE LLRGIYAYG+E PSA+Q RAI+
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAII 53
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/52 (51%), Positives = 43/52 (82%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQI 200
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +2
Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
V++F+++ LK LL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQ 127
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 299 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEXLLRGIYAYGFEKPSA 466
+N D+ S+ G P + + V +T F+D LK LL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 467 IQQRAI 484
IQ+ +I
Sbjct: 70 IQEESI 75
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 6/58 (10%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQI 644
LA G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQV 104
Score = 32.3 bits (70), Expect = 0.062
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 389 ETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 52.0 bits (119), Expect = 7e-08
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQI 135
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXT 505
F D LK LLR I GFE PS +QQ I I T
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQI 130
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 365 DTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
D+ ++ +TF ++ + + L GF+ P+ IQQ AI
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQI 644
AS G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQ 641
GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQ 154
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 641
LA G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQ 345
Score = 31.9 bits (69), Expect = 0.082
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 392 TFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI
Sbjct: 44 GRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQI 91
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQI 644
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQ 641
A GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQ 126
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQ 641
GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQ 251
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 644
+D++ +A +G+GKT + + ++ DT ALI+APTRELA QI
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQI 88
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQ-------IDTSIRECQALILAPTRELAQQI 644
L + +D +AQ+G+GKT + + I+Q+ + T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQI 232
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQI 644
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQI
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQI 341
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 644
GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI
Sbjct: 455 GRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 371 DWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXTR 508
D + V ++ L + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQI 644
GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI
Sbjct: 126 GRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXTRCYRSSPVRNWKNCYFL 556
+E F D+ L E + + I GFE + IQ+R+I P + ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
+A GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QI
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQI 211
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRA 481
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.1 bits (72), Expect = 0.035
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQI 644
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.9 bits (69), Expect = 0.082
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 614
+ + GRD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 615 APTRELAQQI 644
APTREL QI
Sbjct: 262 APTRELVCQI 271
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 359 TLDTDWDQVVETFDDMNLKEXLLRGIYAYGF 451
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQ 638
G VI + +GK+ + I ILQ + + A + PT+ LAQ
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQ 370
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 336 DLREWTLGHLTPT 374
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 362 LDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
LDT+W V + NL+ + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 356 QGPFPEVHRNYLDPSMAHFWNPLANL 279
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 531 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQI 644
G G T F+ SILQQI + SI +C + +P R + ++I
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERI 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,979
Number of Sequences: 5004
Number of extensions: 47367
Number of successful extensions: 150
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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