Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N12
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 81 7e-16
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 81 7e-16
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 77 1e-14
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 77 1e-14
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 55 5e-08
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 53 2e-07
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 52 4e-07
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 52 4e-07
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 52 4e-07
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 48 6e-06
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 48 8e-06
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 45 4e-05
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 45 4e-05
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 43 2e-04
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 41 9e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 41 9e-04
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 40 0.002
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 40 0.002
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 40 0.002
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 40 0.002
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 39 0.003
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 38 0.005
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 37 0.011
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 37 0.011
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 37 0.014
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 37 0.014
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 37 0.014
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 36 0.019
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 36 0.025
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 36 0.025
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 36 0.033
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 34 0.100
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 34 0.100
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 34 0.100
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 34 0.100
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 34 0.100
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 33 0.13
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.70
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.70
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 30 1.6
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 29 3.8
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 28 5.0
U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z48544-1|CAA88435.1| 473|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 81.0 bits (191), Expect = 7e-16
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
RDVIAQAQSGTGKTATFSIS+LQ +DT +RE QALIL+PTRELA QI
Sbjct: 64 RDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQI 110
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 383 VVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXTR 508
V+ TFD M L+E LLRGIYAYGFEKPSAIQQRA+ P I R
Sbjct: 24 VIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAV-PAILKAR 64
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 81.0 bits (191), Expect = 7e-16
Identities = 39/47 (82%), Positives = 43/47 (91%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
RDVIAQAQSGTGKTATFSIS+LQ +DT +RE QALIL+PTRELA QI
Sbjct: 64 RDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQI 110
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 383 VVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXTR 508
++ TFD M L+E LLRGIYAYGFEKPSAIQQRAI P I R
Sbjct: 24 IIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAI-PAILKAR 64
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 356 GTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPC 493
G ++ ++DQVVE+FDDM LKE LLRGIY +GFEKPSAIQ+RAI+PC
Sbjct: 18 GLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPC 63
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G+DVIAQAQSGTGKTATFS+SILQ+ID QAL++APTRELAQQI
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQI 113
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 356 GTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPC 493
G ++ ++DQVVE+FDDM LKE LLRGIY +GFEKPSAIQ+RAI+PC
Sbjct: 18 GLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPC 63
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G+DVIAQAQSGTGKTATFS+SILQ+ID QAL++APTRELAQQI
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQI 113
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/51 (41%), Positives = 39/51 (76%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A G+D++A+A++GTGKT + I ++++I +++ QA+++ PTRELA Q
Sbjct: 76 VALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQ 126
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D L LL GI+ G+EKPS IQ+ +I
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASI 74
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI
Sbjct: 250 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQI 295
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI
Sbjct: 275 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQI 320
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/46 (56%), Positives = 36/46 (78%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI
Sbjct: 659 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQI 704
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 404 MNLKEXLLRGIYAYGFEKPSAIQQRAIMPC 493
M LKE LLRGIY +GFEKPSAIQ+ A+ PC
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPC 30
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
G+DV Q+Q+G+GKT I ILQ ID Q ++LAP R +AQ+
Sbjct: 33 GKDVTIQSQAGSGKTVISLIDILQGIDCEDAHLQVILLAPQRGMAQR 79
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GRD++ QA+SGTGKT FS+ ++ +D+ Q +I+ PTRE++ QI
Sbjct: 59 GRDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQI 106
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GRD++ QA+SGTGKT FS+ ++ +D+ Q +I+ PTRE++ QI
Sbjct: 59 GRDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQI 106
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI
Sbjct: 126 GSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQI 173
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI
Sbjct: 126 GSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQI 173
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G DV+ QA+SG GKTA F I+ LQQ++ E + + TRELA QI
Sbjct: 75 AILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQI 125
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G DV+ QA+SG GKTA F I+ LQQ++ E + + TRELA QI
Sbjct: 75 AILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQI 125
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G DV+ QA+SG GKTA F I+ LQQ++ E + + TRELA QI
Sbjct: 74 AILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQI 124
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G+DVI A++G+GKT F+I +LQ + + L+L PTRELA QI
Sbjct: 78 ALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQI 128
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 641
G+DV+A +++G+GKTA F I +LQ++ +AL+++PTRELA Q
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQ 108
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 641
G+DV+A +++G+GKTA F I +LQ++ +AL+++PTRELA Q
Sbjct: 61 GKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQ 108
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIR--EC-QALILAPTRELAQQI 644
+A G+D+ A A +GTGKTA F + IL+++ + C + L+L PTRELA Q+
Sbjct: 181 VALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQV 235
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 290 EDSKNGPSK-DQGSYDGPPGMDPG-TLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPS 463
E K+G SK Q + D + G +LDT V +F+ MNL +L+ G+ P+
Sbjct: 116 EKRKSGKSKKSQENEDFFSALIDGKSLDTS---VNVSFEQMNLSRQILKACSGAGYSDPT 172
Query: 464 AIQQRAI 484
IQQ I
Sbjct: 173 PIQQACI 179
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
+A GRD+I+ A++G+GKT F + L I + L+L PTRELAQQ+
Sbjct: 162 IAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQV 218
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQ-----ALILAPTRELAQQI 644
G DV+ QA++ GKTA F + I+ +I +T + Q ALILAPTRELA QI
Sbjct: 418 GHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQI 475
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 10/57 (17%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----------ALILAPTRELAQQI 644
RDVI A++G+GKTA F + +L I TS+ + + A+I+APTRELAQQI
Sbjct: 339 RDVIGVAETGSGKTAAFLLPLLVWI-TSLPKMERQEHRDLGPYAIIMAPTRELAQQI 394
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI----DTSIRE---C--QALILAPTRELAQQ 641
L + G+D++A AQ+G+GKTA F + I+ ++ D + C + +IL PTRELA Q
Sbjct: 331 LVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQ 390
Query: 642 I 644
I
Sbjct: 391 I 391
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI----DTSIRE---C--QALILAPTRELAQQ 641
L + G+D++A AQ+G+GKTA F + I+ ++ D + C + +IL PTRELA Q
Sbjct: 331 LVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQ 390
Query: 642 I 644
I
Sbjct: 391 I 391
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ D ++ + +IL PTRELA Q
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQ 433
Query: 642 I 644
I
Sbjct: 434 I 434
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ D ++ + +IL PTRELA Q
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQ 433
Query: 642 I 644
I
Sbjct: 434 I 434
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ D ++ + +IL PTRELA Q
Sbjct: 374 LVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQ 433
Query: 642 I 644
I
Sbjct: 434 I 434
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQ 641
GRDVI A++G+GKT F + + + I + E A+ILAPTRELA Q
Sbjct: 341 GRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQ 392
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----------ALILAPTRELAQQI 644
G+D I +Q+G+GKT F + L ID + + + L+L+PTRELAQQI
Sbjct: 121 GQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQI 179
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATF----SISILQQIDTSIRECQ-ALILAPTRELAQQI 644
A GRDV+ A++G+GKTA + + I+ Q D E A+I+ PTRELA Q+
Sbjct: 299 ALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQV 354
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI-----------DTSIRECQALILAPTRELAQQI 644
+DV+ A++G+GKT F I ++ ++ T +R +ALI+APTREL QI
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQI 84
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI-----------DTSIRECQALILAPTRELAQQI 644
+DV+ A++G+GKT F I ++ ++ T +R +ALI+APTREL QI
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQI 251
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ + + + +IL PTREL Q
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQ 644
Query: 642 I 644
I
Sbjct: 645 I 645
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ + + + +IL PTREL Q
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQ 644
Query: 642 I 644
I
Sbjct: 645 I 645
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIREC-------QALILAPTRELAQQ 641
L G D++A AQ+G+GKTA F + I+ ++ + + + +IL PTREL Q
Sbjct: 585 LIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQ 644
Query: 642 I 644
I
Sbjct: 645 I 645
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTS---IRECQALILAPTRELAQQI 644
DV+ ++ +G+GKT F + +++ I + + ALIL+P+REL QI
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQI 96
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641
G+DV+A A++G+GKT F +I +L +++ +I++PTREL+ Q
Sbjct: 105 GKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQ 155
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQI 644
LA ++++ +A++G+GKT F I ++Q++ D S+ A+I+APT+EL QI
Sbjct: 122 LALENKNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGP-SAVIIAPTKELITQI 179
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 353 PGTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
P + D++ +TF D L E +L+ I G+EK + +Q+ I
Sbjct: 77 PQVDEMDFEPEHKTFADFGLDERILKSIGELGWEKANQVQESVI 120
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQI 644
+A GRD+I A +G+GKT TF + ++ Q++ + LI+ P+RELA+QI
Sbjct: 223 VALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQI 282
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI----------DTSIRECQALILAPTRELAQQ 641
R+V+A A +G+GKT F++ ++ +I ++ + A++L PTRELA Q
Sbjct: 164 RNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQ 219
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 33.9 bits (74), Expect = 0.100
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 15/62 (24%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI------------DTSIRECQ---ALILAPTRELAQ 638
RD+++ AQ+G+GKTA F + I+Q I T+ R AL+L+PTRELA
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAI 236
Query: 639 QI 644
QI
Sbjct: 237 QI 238
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 33.9 bits (74), Expect = 0.100
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 15/62 (24%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI------------DTSIRECQ---ALILAPTRELAQ 638
RD+++ AQ+G+GKTA F + I+Q I T+ R AL+L+PTRELA
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAI 220
Query: 639 QI 644
QI
Sbjct: 221 QI 222
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 33.9 bits (74), Expect = 0.100
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 15/62 (24%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI------------DTSIRECQ---ALILAPTRELAQ 638
RD+++ AQ+G+GKTA F + I+Q I T+ R AL+L+PTRELA
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAI 217
Query: 639 QI 644
QI
Sbjct: 218 QI 219
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 33.9 bits (74), Expect = 0.100
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE----CQALILAPTRELAQQ 641
G DV+ A++G+GKT I +L+ + + ALI++PTRELA Q
Sbjct: 113 GSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTRELALQ 163
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 16/64 (25%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSI----SILQQ----IDTSI-----RECQ---ALILAPTREL 632
GRD+++ AQ+G+GKTA F + +ILQ + S+ R+ Q AL+L+PTREL
Sbjct: 203 GRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTREL 262
Query: 633 AQQI 644
+ QI
Sbjct: 263 SLQI 266
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS-IRECQALILAPTRELAQQI 644
RDV A +G+GKT + + +L + + + QA+IL P + L QI
Sbjct: 157 RDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQI 204
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI------DTSIRE----CQALILAPTRELAQQ 641
G DV+A A +G+GKT F I + ++ D + + + LI+APTREL Q
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI------DTSIRE----CQALILAPTRELAQQ 641
G DV+A A +G+GKT F I + ++ D + + + LI+APTREL Q
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
+VI A +G+GKTA +++L+ + + E +A+ + P ++A ++
Sbjct: 1339 NVIVCAPNGSGKTAIAELAVLRHFENT-PEAKAVYITPMEDMATKV 1383
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 510 VIAQAQSGTGKTATFSISILQQIDTSIREC 599
+ Q GTGKTAT ++ +L+ + S+R C
Sbjct: 198 IYVSGQPGTGKTAT-TMRVLKSLGKSVRSC 226
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQ 572
G D + A++G+GKT FS+ I Q
Sbjct: 39 GADALIAAETGSGKTGAFSLPIAQ 62
>U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical
protein F37C12.7 protein.
Length = 731
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 263 SERRSXDWPEDSKNGPSKD-QG-SYDGPPGMDPGTLDTDWDQVVETFDD 403
SER +W +D ++GP ++ QG + + PG D T+D W + VE +D+
Sbjct: 63 SERVKANWVDD-RDGPIRNIQGHASETFPGKD--TVDKVWRKCVELYDE 108
>Z48544-1|CAA88435.1| 473|Caenorhabditis elegans Hypothetical
protein ZK945.1 protein.
Length = 473
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 621 WEPGSKLDIHECLYRFVVESI*RK 550
WEPG+K H Y ++V+ I R+
Sbjct: 210 WEPGTKSGYHAITYGWIVDQIVRR 233
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 449 FEKPSAIQQRAIMPCIQXTRCYRSSPV 529
F + A+++ PCIQ CY+++P+
Sbjct: 38 FIRRQAVRKTPFKPCIQQESCYQAAPL 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,579,659
Number of Sequences: 27780
Number of extensions: 269582
Number of successful extensions: 759
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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