Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N12
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       41   1e-05
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 9/57 (15%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQI 644
           GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI
Sbjct: 233 GRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQI 289



 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 380 QVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQXTR 508
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A +P I   R
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHA-LPIIMNGR 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 526 SQELEKLLLSLYRFYNKSIQAFVNV 600
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,542
Number of Sequences: 438
Number of extensions: 3270
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)