Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N12
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 77 1e-14
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 76 2e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 75 3e-14
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 71 5e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 62 2e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 59 2e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 59 2e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 57 1e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 54 6e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 54 6e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 5e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 7e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 9e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 47 1e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 46 2e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 5e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 41 6e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 41 6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 40 0.001
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 40 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.001
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 40 0.002
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.002
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 39 0.003
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 39 0.003
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.004
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 38 0.004
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 38 0.004
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 38 0.006
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.008
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 37 0.010
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.010
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.018
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.018
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 36 0.023
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 35 0.054
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 35 0.054
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.071
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 34 0.071
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 34 0.071
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 34 0.071
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 34 0.094
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 34 0.094
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.094
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 33 0.16
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 33 0.16
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.29
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 32 0.29
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 31 0.87
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 0.87
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.0
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 29 3.5
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 4.7
At1g76010.1 68414.m08825 expressed protein 28 4.7
At3g10020.1 68416.m01202 expressed protein 28 6.1
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 28 6.1
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 6.1
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 76.6 bits (180), Expect = 1e-14
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI
Sbjct: 78 GLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQI 125
Score = 64.9 bits (151), Expect = 4e-11
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +2
Query: 359 TLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
T T++D+V ++FD M L+ LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIP 74
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 75.4 bits (177), Expect = 3e-14
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = +2
Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/47 (72%), Positives = 40/47 (85%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
GRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q
Sbjct: 72 GRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118
Score = 64.9 bits (151), Expect = 4e-11
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +2
Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499
TD + + +F+DM +KE +LRG+Y YGFEKPSAIQQRA+MP +Q
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q
Sbjct: 59 GRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQ 105
Score = 53.2 bits (122), Expect = 1e-07
Identities = 19/38 (50%), Positives = 32/38 (84%)
Frame = +2
Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499
+++FDDM + + +LRG+Y YG++KPS IQQRA++P ++
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q
Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D LK LL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/51 (52%), Positives = 38/51 (74%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q
Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D LK LL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 80 AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
F D LK LLR I GFE PS +Q I I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/51 (58%), Positives = 35/51 (68%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
A G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 80 AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
F D LK LLR I GFE PS +Q I I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q
Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D LK LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q
Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D LK LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +3
Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+A G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q
Sbjct: 187 IALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQ 237
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
F+D LK LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 395 FDDMNLKEXLLRGIYA-YGFEKPSAIQ 472
F+D+NL L++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+
Sbjct: 95 GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQL 142
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQ 641
G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQ 113
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQV 160
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644
A GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q+
Sbjct: 150 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQV 206
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQ 641
A GRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q
Sbjct: 136 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 195
Query: 642 I 644
+
Sbjct: 196 V 196
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644
A GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q+
Sbjct: 138 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQV 194
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 644
LA GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI
Sbjct: 200 LALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI 254
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 389 ETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
+A GRD+I A++G+GKT + + L + R Q LILAPTRELA QI
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
+A GRD+I A++G+GKT + + L + R Q LILAPTRELA QI
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 644
G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+
Sbjct: 83 GKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 377 DQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQI 644
RDVI A++G+GKTA F + +L I + A+++APTRELAQQI
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQI 405
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELA 635
A G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA
Sbjct: 43 ALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELA 102
Query: 636 QQI 644
QI
Sbjct: 103 IQI 105
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQ 638
+ + GRD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA
Sbjct: 179 ILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELAC 238
Query: 639 QI 644
QI
Sbjct: 239 QI 240
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
+A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
+A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
+A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQ 641
A GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q
Sbjct: 105 ALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQ 158
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQI 644
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q+
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 110
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q
Sbjct: 91 GKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644
A G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 144 ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644
A G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 7 ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644
GRD I A++G+GKT F + +L+ I D E L++APTREL QQI
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 644
GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 371 DWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
D + V+TF+D ++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644
GRD I A++G+GKT F + +L+ I D E L++APTREL QQI
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
+A GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QI
Sbjct: 132 MAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQI 188
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQA-LILAPTRELAQQI 644
+A RD++A A++G+GKT + I LQ+I R L+L+PTRELA QI
Sbjct: 262 IAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQI 317
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
G+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q
Sbjct: 419 GKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = +3
Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
+A RD++A A++G+GKT + I +L+ R LILAPTRELA QI
Sbjct: 468 IALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQI 523
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.018
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 36.3 bits (80), Expect = 0.018
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Frame = +3
Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614
+Q + CL G+D + +A++GTGK+ F + ++L+ +++ + ALIL
Sbjct: 354 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALIL 411
Query: 615 APTRELAQQI 644
PTRELA QI
Sbjct: 412 CPTRELASQI 421
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641
G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q
Sbjct: 191 GEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
G+D++A+A++GTGKT F + ++ + D L++ PTRELA Q
Sbjct: 117 GKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 644
G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 34.3 bits (75), Expect = 0.071
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQI 644
GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 34.3 bits (75), Expect = 0.071
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Frame = +3
Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614
+Q + CL G+D + +A++GTGK+ F + ++L+ +++ + LIL
Sbjct: 401 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLIL 458
Query: 615 APTRELAQQI 644
PTRELA QI
Sbjct: 459 CPTRELASQI 468
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 644
GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI 578
A G+DVI A++G+GKT F + ILQ++
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 33.9 bits (74), Expect = 0.094
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 641
GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 422 LLRGIYAYGFEKPSAIQQRAIMPCIQXTRCYRSSPVRNWKNCYFL 556
+LR + GF++P+ IQ++AI + C+ +P + K F+
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFI 196
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.9 bits (74), Expect = 0.094
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELAQQ 641
G D + Q+ +G+GKT + + IL +I + E QA+I+AP+REL Q
Sbjct: 147 GHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ 206
Query: 642 I 644
I
Sbjct: 207 I 207
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 106
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 107
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQI 644
+DV A +G+GKT F + +++ + S + +I++PTREL+ QI
Sbjct: 54 KDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQI 106
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641
G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q
Sbjct: 126 GKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQ 176
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ 641
GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 644
G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Frame = +3
Query: 504 RDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQI 644
+ V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q+
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQ 641
GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 224 FPFSYCG*NMSYSSERRSXDWPED--SKNG 307
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 260 SSERRSXDWPEDSK---NGPSKDQGSYDGPPGMDPG 358
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 305 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQR 478
GP + D PP MD G + D +QV ++ DD+ ++ L++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVE--LVKGEVEVAKEAPAGVARV 140
Query: 479 AIMP 490
+ P
Sbjct: 141 EVDP 144
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 27.9 bits (59), Expect = 6.1
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Frame = +3
Query: 267 KEGXKIGQRIPKMG----HRRIKVVTMDLREWTL----GHLTPTGIKLSKPSMT*TSKXN 422
+EG R+ K+ +RR+K + L + L L P +PS+ SK +
Sbjct: 123 EEGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSV---SKKD 179
Query: 423 C*EAYTPMVLKNLLQSSNAQ*CLASXGRDV-IAQAQSGTGKTATFSISILQQI--DTSIR 593
+++TP KNL QS A +DV + GTGKT T +LQ++ + I
Sbjct: 180 V-KSFTPFN-KNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKIL 237
Query: 594 ECQALILA 617
C A +A
Sbjct: 238 ACAASNIA 245
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 501 GRDVIAQAQSGTGKTATFSISILQQI 578
G+DVI A++G+GKT + I+ Q+
Sbjct: 117 GKDVIVAAETGSGKTHGYLAPIIDQL 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,776
Number of Sequences: 28952
Number of extensions: 245008
Number of successful extensions: 693
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -