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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N12
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72730.1 68414.m08410 eukaryotic translation initiation facto...    77   1e-14
At3g13920.1 68416.m01758 eukaryotic translation initiation facto...    76   2e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    75   3e-14
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    71   5e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    62   2e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    59   2e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    59   2e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              57   1e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    57   1e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    57   1e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    57   1e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    54   6e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              54   6e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    53   2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    48   5e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    48   7e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    47   9e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    47   1e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    46   2e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    45   4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    45   5e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    41   6e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    41   6e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    40   0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    40   0.001
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    40   0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    40   0.001
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    40   0.002
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    40   0.002
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    40   0.002
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    40   0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              39   0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    39   0.002
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    39   0.003
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    39   0.003
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    39   0.003
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    38   0.004
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    38   0.004
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    38   0.004
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    38   0.006
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    38   0.008
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    37   0.010
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    37   0.010
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    36   0.018
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    36   0.018
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    36   0.023
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    35   0.054
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    35   0.054
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    34   0.071
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    34   0.071
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    34   0.071
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    34   0.071
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    34   0.094
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    34   0.094
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    34   0.094
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    33   0.16 
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    33   0.16 
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       32   0.29 
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    32   0.29 
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    31   0.87 
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    31   0.87 
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    29   2.0  
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           29   3.5  
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ...    28   4.7  
At1g76010.1 68414.m08825 expressed protein                             28   4.7  
At3g10020.1 68416.m01202 expressed protein                             28   6.1  
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t...    28   6.1  
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    28   6.1  

>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI
Sbjct: 78  GLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQI 125



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +2

Query: 359 TLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
           T  T++D+V ++FD M L+  LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 31  TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIP 74


>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI
Sbjct: 76  GLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = +2

Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
           T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32  TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           G DVI QAQSGTGKTATF   +LQQ+D ++ +CQAL+LAPTRELAQQI
Sbjct: 76  GLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +2

Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490
           T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 32  TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 34/47 (72%), Positives = 40/47 (85%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           GRDVIAQAQSGTGKT+  ++S+ Q +DTS RE QALIL+PTRELA Q
Sbjct: 72  GRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +2

Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499
           TD  + + +F+DM +KE +LRG+Y YGFEKPSAIQQRA+MP +Q
Sbjct: 28  TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           GRDVIAQAQSGTGKT+  +IS+ Q ++ S R+ Q L+L+P+RELA Q
Sbjct: 59  GRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQ 105



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 19/38 (50%), Positives = 32/38 (84%)
 Frame = +2

Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499
           +++FDDM + + +LRG+Y YG++KPS IQQRA++P ++
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/51 (52%), Positives = 38/51 (74%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           +A  GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q
Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           F+D  LK  LL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 27/51 (52%), Positives = 38/51 (74%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           +A  GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q
Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           F+D  LK  LL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/51 (58%), Positives = 35/51 (68%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           A  G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI
Sbjct: 80  AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
           F D  LK  LLR I   GFE PS +Q   I   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/51 (58%), Positives = 35/51 (68%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           A  G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI
Sbjct: 80  AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496
           F D  LK  LLR I   GFE PS +Q   I   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/51 (50%), Positives = 37/51 (72%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           +A  G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q
Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           F+D  LK  LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/51 (50%), Positives = 37/51 (72%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           +A  G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q
Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           F+D  LK  LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +3

Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI
Sbjct: 2   DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           +A  G D++A+A++GTGKT  F I  L++ID      QA+IL PTRELA Q
Sbjct: 187 IALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQ 237



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           F+D  LK  LLRGIY  GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641
           + +IAQA +G+GKT  F + +L ++D ++RE QAL + PTRELA Q
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 395 FDDMNLKEXLLRGIYA-YGFEKPSAIQ 472
           F+D+NL   L++G+Y    FEKPS IQ
Sbjct: 93  FEDLNLSPELMKGLYVEMKFEKPSKIQ 119


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/48 (47%), Positives = 33/48 (68%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           GRDV+  AQ+G+GKTA F++ IL ++        AL++ PTRELA Q+
Sbjct: 95  GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQL 142


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQ 641
           G DV+A A++G+GKTA F I +L+++   + +   +ALIL+PTR+LA+Q
Sbjct: 65  GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQ 113


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644
           GRD I  AQ+G+GKT T+ + I   I+      QA+I+ PTREL  Q+
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQV 160


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644
           A  GRD+I +A++GTGKT  F I I+ +I          +  Q L+LAPTRELA+Q+
Sbjct: 150 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQV 206


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQ 641
           A  GRD+IA+A++GTGKT  F I I++++       T+ R      + L+LAPTRELA+Q
Sbjct: 136 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 195

Query: 642 I 644
           +
Sbjct: 196 V 196


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644
           A  GRD+I +A++GTGKT  F I I+ +I          R    L+LAPTRELA+Q+
Sbjct: 138 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQV 194


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 644
           LA  GRD+ A A +G+GKTA F++  L+++      +   + LIL PTRELA QI
Sbjct: 200 LALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI 254



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 389 ETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           +TF ++NL   LLR     G++KP+ IQ   I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
           +A  GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QI
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
           +A  GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QI
Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 644
           G+DV+A+A++G+GKT  + + +LQ++   D+  ++     A IL P+REL QQ+
Sbjct: 83  GKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 377 DQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           ++  ++F+++ L   L+R +   G EKP+ IQQ AI
Sbjct: 42  EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
           GRD++A AQ+G+GKTA F   I+  I  D  ++  +        A+IL+PTRELA QI
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQI 644
           RDVI  A++G+GKTA F + +L  I        +       A+++APTRELAQQI
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQI 405


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 12/63 (19%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELA 635
           A  G+DVI  AQ+G+GKT  F+I ILQ +   + + +            A +L+PTRELA
Sbjct: 43  ALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELA 102

Query: 636 QQI 644
            QI
Sbjct: 103 IQI 105


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQ 638
           + + GRD++A AQ+G+GKTA F   I+  I  D  I   +        A+IL+PTRELA 
Sbjct: 179 ILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELAC 238

Query: 639 QI 644
           QI
Sbjct: 239 QI 240


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
           +A  GRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
           +A  GRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
           +A  GRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QI
Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQ 641
           A  GRD++  A++G+GKT  F I IL+++       +     +I++PTRELA Q
Sbjct: 105 ALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQ 158


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQI 644
           RD+   + +G+GKT ++++ I+Q +    +R  +AL++ PTR+LA Q+
Sbjct: 63  RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 110


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
           G+DV+A+A++GTGKT  F +  ++ +        D       AL++ PTRELA Q
Sbjct: 91  GKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644
           A  G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q+
Sbjct: 144 ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644
           A  G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q+
Sbjct: 7   ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644
           GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL QQI
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 644
           GRDVI  A++G+GKTA F + ++  I     ++  +    +I APTRELA QI
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 DWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484
           D  + V+TF+D      ++  I    +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644
           GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL QQI
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644
           +A  GRD+I  A++G+GKT ++ +  +  ++             L+LAPTRELA QI
Sbjct: 132 MAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQI 188


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQA-LILAPTRELAQQI 644
           +A   RD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QI
Sbjct: 262 IAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQI 317


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
           G+DV+A+A++GTGKT  F +  ++ +        D+       L++ PTRELA Q
Sbjct: 419 GKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +3

Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644
           +A   RD++A A++G+GKT  + I    +L+      R     LILAPTRELA QI
Sbjct: 468 IALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQI 523


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
           RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644
           RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
 Frame = +3

Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614
           +Q +    CL   G+D + +A++GTGK+  F +    ++L+ +++      +    ALIL
Sbjct: 354 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALIL 411

Query: 615 APTRELAQQI 644
            PTRELA QI
Sbjct: 412 CPTRELASQI 421


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641
           G DV+  A++G+GKT  F   ++ +L ++  + R     L++ PTRELA Q
Sbjct: 191 GEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641
           G+D++A+A++GTGKT  F +  ++ +        D        L++ PTRELA Q
Sbjct: 117 GKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 644
           G D++ +A++G GKT  F + IL+ +              R    L+L PTRELA+Q+
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQI 644
           GRDV+  A +GTGKT  +   ++  +     +        AL++ PTREL  Q+
Sbjct: 67  GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
 Frame = +3

Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614
           +Q +    CL   G+D + +A++GTGK+  F +    ++L+ +++      +     LIL
Sbjct: 401 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLIL 458

Query: 615 APTRELAQQI 644
            PTRELA QI
Sbjct: 459 CPTRELASQI 468


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 644
           GRD+I  A++G+GKT  F I  +  +    ++            L+L+PTRELA QI
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI 578
           A  G+DVI  A++G+GKT  F + ILQ++
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRL 253


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 641
           GR+  A A +G+GKT  F   +L ++   S    +A+IL+P RELA Q
Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225



 Score = 31.1 bits (67), Expect = 0.66
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 422 LLRGIYAYGFEKPSAIQQRAIMPCIQXTRCYRSSPVRNWKNCYFL 556
           +LR +   GF++P+ IQ++AI   +    C+  +P  + K   F+
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFI 196


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELAQQ 641
           G D + Q+ +G+GKT  + + IL +I             +    E QA+I+AP+REL  Q
Sbjct: 147 GHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ 206

Query: 642 I 644
           I
Sbjct: 207 I 207


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644
           +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI
Sbjct: 54  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 106


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644
           +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI
Sbjct: 55  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 107


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQI 644
           +DV   A +G+GKT  F + +++ +  S        +   +I++PTREL+ QI
Sbjct: 54  KDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQI 106


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641
           G+DV+  A++G+GKT  F   ++ +L +   S R     +++ PTRELA Q
Sbjct: 126 GKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQ 176


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ 641
           GRD+I  A +G+GKT  F + ++     ++I   I   +   AL++ P+RELA+Q
Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 644
           G+  I   QSG+GKT  + + ++Q++          S   C + ++L PT ELA Q+
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
 Frame = +3

Query: 504 RDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQI 644
           + V+  + +G+GKT  + + I+Q +          T  R  + ++L PTREL++Q+
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQ 641
           GRD+I  A +G+GKT  F      I++ +++   I   +    LI+ P+RELA+Q
Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237


>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
           PF02575: Uncharacterized BCR, YbaB family COG0718
          Length = 182

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 224 FPFSYCG*NMSYSSERRSXDWPED--SKNG 307
           FPFS+   N S +S+RR+  WP+   SKNG
Sbjct: 16  FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +2

Query: 260 SSERRSXDWPEDSK---NGPSKDQGSYDGPPGMDPG 358
           S  R   D P   +   +GPS+ +G YDGP G   G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317


>At3g10020.1 68416.m01202 expressed protein
          Length = 149

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 305 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQR 478
           GP +  D      PP MD G  + D +QV ++ DD+ ++  L++G      E P+ + + 
Sbjct: 83  GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVE--LVKGEVEVAKEAPAGVARV 140

Query: 479 AIMP 490
            + P
Sbjct: 141 EVDP 144


>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
           Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
           II gene enhancer-binding protein)(RIPE3B-binding complex
           3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
           identical to putative helicase (atpc-2 gene) cDNA
           NCBI_gi:11191230
          Length = 639

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
 Frame = +3

Query: 267 KEGXKIGQRIPKMG----HRRIKVVTMDLREWTL----GHLTPTGIKLSKPSMT*TSKXN 422
           +EG     R+ K+     +RR+K   + L +  L      L P      +PS+   SK +
Sbjct: 123 EEGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSV---SKKD 179

Query: 423 C*EAYTPMVLKNLLQSSNAQ*CLASXGRDV-IAQAQSGTGKTATFSISILQQI--DTSIR 593
             +++TP   KNL QS       A   +DV +     GTGKT T    +LQ++   + I 
Sbjct: 180 V-KSFTPFN-KNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKIL 237

Query: 594 ECQALILA 617
            C A  +A
Sbjct: 238 ACAASNIA 245


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 501 GRDVIAQAQSGTGKTATFSISILQQI 578
           G+DVI  A++G+GKT  +   I+ Q+
Sbjct: 117 GKDVIVAAETGSGKTHGYLAPIIDQL 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,776
Number of Sequences: 28952
Number of extensions: 245008
Number of successful extensions: 693
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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