BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_N12 (649 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 77 1e-14 At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 76 2e-14 At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 75 3e-14 At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 71 5e-13 At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 62 2e-10 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 59 2e-09 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 59 2e-09 At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 57 1e-08 At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08 At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 54 6e-08 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 54 6e-08 At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07 At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 5e-06 At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 7e-06 At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 9e-06 At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 47 1e-05 At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 46 2e-05 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 45 4e-05 At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 5e-05 At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 41 6e-04 At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 41 6e-04 At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 40 0.001 At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 40 0.001 At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.001 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 40 0.002 At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 40 0.002 At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 40 0.002 At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 40 0.002 At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.002 At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.002 At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003 At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 39 0.003 At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 39 0.003 At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.004 At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 38 0.004 At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 38 0.004 At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 38 0.006 At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.008 At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 37 0.010 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.010 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.018 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.018 At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 36 0.023 At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 35 0.054 At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 35 0.054 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.071 At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 34 0.071 At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 34 0.071 At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 34 0.071 At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 34 0.094 At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 34 0.094 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.094 At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 33 0.16 At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 33 0.16 At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.29 At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 32 0.29 At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 31 0.87 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 0.87 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.0 At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 29 3.5 At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 4.7 At1g76010.1 68414.m08825 expressed protein 28 4.7 At3g10020.1 68416.m01202 expressed protein 28 6.1 At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 28 6.1 At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 6.1 >At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative similar to Eukaryotic initiation factor 4A-10 GB:P41382 [Nicotiana tabacum]; identical to (putative) RNA helicase GB:CAA09211 [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999)) Length = 414 Score = 76.6 bits (180), Expect = 1e-14 Identities = 36/48 (75%), Positives = 41/48 (85%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI Sbjct: 78 GLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQI 125 Score = 64.9 bits (151), Expect = 4e-11 Identities = 29/44 (65%), Positives = 36/44 (81%) Frame = +2 Query: 359 TLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490 T T++D+V ++FD M L+ LLRGIYAYGFEKPSAIQQR I+P Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIP 74 >At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain Length = 412 Score = 76.2 bits (179), Expect = 2e-14 Identities = 36/48 (75%), Positives = 41/48 (85%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123 Score = 65.7 bits (153), Expect = 3e-11 Identities = 30/41 (73%), Positives = 34/41 (82%) Frame = +2 Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490 T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72 >At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] Length = 412 Score = 75.4 bits (177), Expect = 3e-14 Identities = 35/48 (72%), Positives = 41/48 (85%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123 Score = 66.5 bits (155), Expect = 1e-11 Identities = 30/41 (73%), Positives = 35/41 (85%) Frame = +2 Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMP 490 T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP 72 >At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984 Length = 408 Score = 71.3 bits (167), Expect = 5e-13 Identities = 34/47 (72%), Positives = 40/47 (85%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 GRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q Sbjct: 72 GRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118 Score = 64.9 bits (151), Expect = 4e-11 Identities = 27/44 (61%), Positives = 36/44 (81%) Frame = +2 Query: 368 TDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499 TD + + +F+DM +KE +LRG+Y YGFEKPSAIQQRA+MP +Q Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQ 71 >At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 392 Score = 62.5 bits (145), Expect = 2e-10 Identities = 29/47 (61%), Positives = 38/47 (80%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q Sbjct: 59 GRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQ 105 Score = 53.2 bits (122), Expect = 1e-07 Identities = 19/38 (50%), Positives = 32/38 (84%) Frame = +2 Query: 386 VETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCIQ 499 +++FDDM + + +LRG+Y YG++KPS IQQRA++P ++ Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 59.3 bits (137), Expect = 2e-09 Identities = 27/51 (52%), Positives = 38/51 (74%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 +A GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214 Score = 37.9 bits (84), Expect = 0.006 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 F+D LK LL GIY GFE+PS IQ+ +I Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 59.3 bits (137), Expect = 2e-09 Identities = 27/51 (52%), Positives = 38/51 (74%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 +A GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q Sbjct: 164 IALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQ 214 Score = 37.9 bits (84), Expect = 0.006 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 F+D LK LL GIY GFE+PS IQ+ +I Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162 >At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative Length = 427 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/51 (58%), Positives = 35/51 (68%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 A G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI Sbjct: 80 AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496 F D LK LLR I GFE PS +Q I I Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81 >At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 427 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/51 (58%), Positives = 35/51 (68%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 A G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI Sbjct: 80 AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130 Score = 30.3 bits (65), Expect = 1.2 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAIMPCI 496 F D LK LLR I GFE PS +Q I I Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI 81 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 56.8 bits (131), Expect = 1e-08 Identities = 26/51 (50%), Positives = 37/51 (72%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 +A G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 F+D LK LL+GIY GFEKPS IQ+ +I Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 56.8 bits (131), Expect = 1e-08 Identities = 26/51 (50%), Positives = 37/51 (72%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 +A G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q Sbjct: 157 IALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQ 207 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 F+D LK LL+GIY GFEKPS IQ+ +I Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155 >At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 344 Score = 54.4 bits (125), Expect = 6e-08 Identities = 28/46 (60%), Positives = 33/46 (71%) Frame = +3 Query: 507 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 54.4 bits (125), Expect = 6e-08 Identities = 26/51 (50%), Positives = 35/51 (68%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 +A G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q Sbjct: 187 IALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQ 237 Score = 41.5 bits (93), Expect = 5e-04 Identities = 19/30 (63%), Positives = 22/30 (73%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 F+D LK LLRGIY GFEKPS IQ+ +I Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185 >At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR:I49731 Length = 496 Score = 52.8 bits (121), Expect = 2e-07 Identities = 23/46 (50%), Positives = 34/46 (73%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 641 + +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQ 177 Score = 31.5 bits (68), Expect = 0.50 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +2 Query: 395 FDDMNLKEXLLRGIYA-YGFEKPSAIQ 472 F+D+NL L++G+Y FEKPS IQ Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119 >At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family Length = 491 Score = 48.0 bits (109), Expect = 5e-06 Identities = 23/48 (47%), Positives = 33/48 (68%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ Sbjct: 95 GRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQL 142 >At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar to RNA helicase GI:3776027 from [Arabidopsis thaliana] Length = 513 Score = 47.6 bits (108), Expect = 7e-06 Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 2/49 (4%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQ 641 G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQ 113 >At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo sapiens, SWISSPROT:IF42_HUMAN Length = 472 Score = 47.2 bits (107), Expect = 9e-06 Identities = 22/48 (45%), Positives = 30/48 (62%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 644 GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQV 160 >At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 610 Score = 46.8 bits (106), Expect = 1e-05 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644 A GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q+ Sbjct: 150 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQV 206 >At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 747 Score = 46.4 bits (105), Expect = 2e-05 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 10/61 (16%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQ 641 A GRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q Sbjct: 136 ALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQ 195 Query: 642 I 644 + Sbjct: 196 V 196 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 45.2 bits (102), Expect = 4e-05 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 6/57 (10%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQI 644 A GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q+ Sbjct: 138 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQV 194 >At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 Length = 789 Score = 44.8 bits (101), Expect = 5e-05 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQI 644 LA GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI Sbjct: 200 LALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI 254 Score = 30.3 bits (65), Expect = 1.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 389 ETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 +TF ++NL LLR G++KP+ IQ I Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198 >At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 591 Score = 41.1 bits (92), Expect = 6e-04 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644 +A GRD+I A++G+GKT + + L + R Q LILAPTRELA QI Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254 >At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 484 Score = 41.1 bits (92), Expect = 6e-04 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644 +A GRD+I A++G+GKT + + L + R Q LILAPTRELA QI Sbjct: 198 MALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQI 254 >At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16) identical to cDNA DEAD box RNA helicase, RH16 GI:3776006 Length = 626 Score = 40.3 bits (90), Expect = 0.001 Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 6/54 (11%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 644 G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ Sbjct: 83 GKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136 Score = 32.3 bits (70), Expect = 0.29 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +2 Query: 377 DQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 ++ ++F+++ L L+R + G EKP+ IQQ AI Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 40.3 bits (90), Expect = 0.001 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 10/58 (17%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644 GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253 >At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 733 Score = 40.3 bits (90), Expect = 0.001 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 8/55 (14%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQI 644 RDVI A++G+GKTA F + +L I + A+++APTRELAQQI Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQI 405 >At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL:AF009179 Length = 456 Score = 39.9 bits (89), Expect = 0.001 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 12/63 (19%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELA 635 A G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA Sbjct: 43 ALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELA 102 Query: 636 QQI 644 QI Sbjct: 103 IQI 105 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 39.5 bits (88), Expect = 0.002 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 10/62 (16%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQ 638 + + GRD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA Sbjct: 179 ILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELAC 238 Query: 639 QI 644 QI Sbjct: 239 QI 240 >At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 39.5 bits (88), Expect = 0.002 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644 +A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246 >At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 39.5 bits (88), Expect = 0.002 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644 +A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246 >At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 618 Score = 39.5 bits (88), Expect = 0.002 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644 +A GRD++A A++G+GKT + I LQ+I R L+L+PTRELA QI Sbjct: 191 IAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI 246 >At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative Length = 739 Score = 39.1 bits (87), Expect = 0.002 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQ 641 A GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q Sbjct: 105 ALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQ 158 >At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar to D-E-A-D box protein [Drosophila melanogaster] GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 512 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQI 644 RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q+ Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQV 110 >At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong similarity to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH31 GI:3776030 Length = 522 Score = 38.7 bits (86), Expect = 0.003 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641 G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q Sbjct: 91 GKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145 >At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 505 Score = 38.7 bits (86), Expect = 0.003 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644 A G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+ Sbjct: 144 ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202 >At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 368 Score = 38.7 bits (86), Expect = 0.003 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 644 A G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+ Sbjct: 7 ALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65 >At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to RNA helicase GB:A57514 GI:897915 from [Rattus norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 989 Score = 38.3 bits (85), Expect = 0.004 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644 GRD I A++G+GKT F + +L+ I D E L++APTREL QQI Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485 >At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 760 Score = 38.3 bits (85), Expect = 0.004 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 644 GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 371 DWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQRAI 484 D + V+TF+D ++ I +EKP+AIQ +A+ Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259 >At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 1166 Score = 38.3 bits (85), Expect = 0.004 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQI 644 GRD I A++G+GKT F + +L+ I D E L++APTREL QQI Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618 >At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI:5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 501 Score = 37.9 bits (84), Expect = 0.006 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 644 +A GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QI Sbjct: 132 MAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQI 188 >At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 713 Score = 37.5 bits (83), Expect = 0.008 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQA-LILAPTRELAQQI 644 +A RD++A A++G+GKT + I LQ+I R L+L+PTRELA QI Sbjct: 262 IAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQI 317 >At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI:3776024 Length = 850 Score = 37.1 bits (82), Expect = 0.010 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641 G+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q Sbjct: 419 GKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 37.1 bits (82), Expect = 0.010 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Frame = +3 Query: 489 LASXGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQI 644 +A RD++A A++G+GKT + I +L+ R LILAPTRELA QI Sbjct: 468 IALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQI 523 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 36.3 bits (80), Expect = 0.018 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644 RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 36.3 bits (80), Expect = 0.018 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 644 RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245 >At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 798 Score = 35.9 bits (79), Expect = 0.023 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%) Frame = +3 Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614 +Q + CL G+D + +A++GTGK+ F + ++L+ +++ + ALIL Sbjct: 354 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALIL 411 Query: 615 APTRELAQQI 644 PTRELA QI Sbjct: 412 CPTRELASQI 421 >At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334 Length = 633 Score = 34.7 bits (76), Expect = 0.054 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641 G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q Sbjct: 191 GEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241 >At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 563 Score = 34.7 bits (76), Expect = 0.054 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 641 G+D++A+A++GTGKT F + ++ + D L++ PTRELA Q Sbjct: 117 GKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 34.3 bits (75), Expect = 0.071 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 644 G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+ Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190 >At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17) identical to GB:CAA09207, contains a DEAD/DEAH box family ATP-dependent helicas signature; identical to cDNA DEAD box RNA helicase, RH17 GI:3776008 Length = 609 Score = 34.3 bits (75), Expect = 0.071 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQI 644 GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQV 120 >At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 845 Score = 34.3 bits (75), Expect = 0.071 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%) Frame = +3 Query: 462 LQSSNAQ*CLASXGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALIL 614 +Q + CL G+D + +A++GTGK+ F + ++L+ +++ + LIL Sbjct: 401 VQDATLSECL--DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLIL 458 Query: 615 APTRELAQQI 644 PTRELA QI Sbjct: 459 CPTRELASQI 468 >At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar to p68 RNA helicase [Schizosaccharomyces pombe] GI:173419 Length = 537 Score = 34.3 bits (75), Expect = 0.071 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 644 GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207 >At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB:CAA09204 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH13 GI:3776002 Length = 832 Score = 33.9 bits (74), Expect = 0.094 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 492 ASXGRDVIAQAQSGTGKTATFSISILQQI 578 A G+DVI A++G+GKT F + ILQ++ Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRL 253 >At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to RNA helicase involved in rRNA processing GB:6321267 from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH box domain Length = 541 Score = 33.9 bits (74), Expect = 0.094 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 641 GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q Sbjct: 178 GRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225 Score = 31.1 bits (67), Expect = 0.66 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +2 Query: 422 LLRGIYAYGFEKPSAIQQRAIMPCIQXTRCYRSSPVRNWKNCYFL 556 +LR + GF++P+ IQ++AI + C+ +P + K F+ Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFI 196 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 33.9 bits (74), Expect = 0.094 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 13/61 (21%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELAQQ 641 G D + Q+ +G+GKT + + IL +I + E QA+I+AP+REL Q Sbjct: 147 GHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ 206 Query: 642 I 644 I Sbjct: 207 I 207 >At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae) Length = 558 Score = 33.1 bits (72), Expect = 0.16 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644 +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 106 >At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 465 Score = 33.1 bits (72), Expect = 0.16 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQI 644 +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQI 107 >At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) Length = 593 Score = 32.3 bits (70), Expect = 0.29 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQI 644 +DV A +G+GKT F + +++ + S + +I++PTREL+ QI Sbjct: 54 KDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQI 106 >At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 568 Score = 32.3 bits (70), Expect = 0.29 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 641 G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q Sbjct: 126 GKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQ 176 >At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272 Length = 542 Score = 30.7 bits (66), Expect = 0.87 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 8/55 (14%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ 641 GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q Sbjct: 134 GRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQ 188 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 30.7 bits (66), Expect = 0.87 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 644 G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+ Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 29.5 bits (63), Expect = 2.0 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Frame = +3 Query: 504 RDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQI 644 + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q+ Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205 >At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative Length = 591 Score = 28.7 bits (61), Expect = 3.5 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 8/55 (14%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQ 641 GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q Sbjct: 183 GRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237 >At2g24020.1 68415.m02869 expressed protein contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718 Length = 182 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = +2 Query: 224 FPFSYCG*NMSYSSERRSXDWPED--SKNG 307 FPFS+ N S +S+RR+ WP+ SKNG Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43 >At1g76010.1 68414.m08825 expressed protein Length = 350 Score = 28.3 bits (60), Expect = 4.7 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = +2 Query: 260 SSERRSXDWPEDSK---NGPSKDQGSYDGPPGMDPG 358 S R D P + +GPS+ +G YDGP G G Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317 >At3g10020.1 68416.m01202 expressed protein Length = 149 Score = 27.9 bits (59), Expect = 6.1 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 305 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEXLLRGIYAYGFEKPSAIQQR 478 GP + D PP MD G + D +QV ++ DD+ ++ L++G E P+ + + Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVE--LVKGEVEVAKEAPAGVARV 140 Query: 479 AIMP 490 + P Sbjct: 141 EVDP 144 >At2g03270.1 68415.m00280 DNA-binding protein, putative similar to Swiss-Prot:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)[Mesocricetus auratus]; identical to putative helicase (atpc-2 gene) cDNA NCBI_gi:11191230 Length = 639 Score = 27.9 bits (59), Expect = 6.1 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%) Frame = +3 Query: 267 KEGXKIGQRIPKMG----HRRIKVVTMDLREWTL----GHLTPTGIKLSKPSMT*TSKXN 422 +EG R+ K+ +RR+K + L + L L P +PS+ SK + Sbjct: 123 EEGLNTSLRLEKLANEVTYRRMKDTLIQLSKGVLRGPASDLVPVLFGERQPSV---SKKD 179 Query: 423 C*EAYTPMVLKNLLQSSNAQ*CLASXGRDV-IAQAQSGTGKTATFSISILQQI--DTSIR 593 +++TP KNL QS A +DV + GTGKT T +LQ++ + I Sbjct: 180 V-KSFTPFN-KNLDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKIL 237 Query: 594 ECQALILA 617 C A +A Sbjct: 238 ACAASNIA 245 >At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22) similar to RNA helicase GI:3776015 from [Arabidopsis thaliana]; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00270: DEAD/DEAH box helicase; matches EST OAO811-2 Length = 581 Score = 27.9 bits (59), Expect = 6.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 501 GRDVIAQAQSGTGKTATFSISILQQI 578 G+DVI A++G+GKT + I+ Q+ Sbjct: 117 GKDVIVAAETGSGKTHGYLAPIIDQL 142 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,666,776 Number of Sequences: 28952 Number of extensions: 245008 Number of successful extensions: 693 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 651 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1344285648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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