Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N11
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.33 
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   4.1  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   4.1  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   4.1  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   9.5  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 550 NQKVKRYHVHGRGGE*NPDLLSVXKQXSVL 461
           N+ +  YHV G GG   PD++S+ +  ++L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNIL 564


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 610 RKSKLFESP*ADFDKWHF*VNQKVKRYHV 524
           R  ++F +P   + KWH  VNQ  KRY +
Sbjct: 97  RSGRMF-APTKTWRKWHVKVNQNEKRYAI 124


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 610 RKSKLFESP*ADFDKWHF*VNQKVKRYHV 524
           R  ++F +P   + KWH  VNQ  KRY +
Sbjct: 97  RSGRMF-APTKTWRKWHVKVNQNEKRYAI 124


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 286 DLDVTLVILSRFRYYKTRIIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFT 110
           D+  T + +S+ RY++     A  N I YFD  + +  IK    + I++    + ++FT
Sbjct: 106 DIPRTSIRVSKLRYWQRDYRLAFPNFIFYFD--NVDEEIKRRVTQKINNLGAKVATLFT 162


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 223 ANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTL 107
           AN+ V  Y  +   +RSI ++KL  IS+ +G     FTL
Sbjct: 62  ANALVQGYLSYSERKRSIFSSKLYAISALSGLCIIPFTL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,541
Number of Sequences: 5004
Number of extensions: 49690
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)