Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N11
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0621 + 4645583-4646902                                           30   1.8  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   3.2  
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572...    27   9.8  
04_04_0593 - 26480036-26481438,26481915-26482083                       27   9.8  

>01_01_0621 + 4645583-4646902
          Length = 439

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 232 IIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTLC 104
           IIA  SNV SY++  H ER+ KT+    +       G+   +C
Sbjct: 232 IIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVC 274


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 392 YDNPNSWGKTYGEHKSHLEFSDT---QYRXLFXYAQEVGILFTASAMDMV 532
           Y +PNS+G+     K H+++S T    +R    +A  VG   T    +++
Sbjct: 65  YCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTHPSEVI 114


>11_01_0694 -
           5719188-5720400,5720439-5721194,5722004-5722247,
           5723862-5723901
          Length = 750

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 220 NSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTLC 104
           NS  ISY    H+  ++ +N  KP+ SSTG+L  +  LC
Sbjct: 19  NSGGISY----HY--ALLSNCFKPLESSTGYLAKIRALC 51


>04_04_0593 - 26480036-26481438,26481915-26482083
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 57  YLSNF---DLEREVDKPLLHSVNILPSHPVELEIGFSLFVFMERSKW 188
           Y+SN+    L   ++  ++  V ILPS    + IGF+LFV  E  +W
Sbjct: 183 YVSNYAFSGLSEHINWRIMLGVGILPS----VFIGFALFVIPESPRW 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,642
Number of Sequences: 37544
Number of extensions: 313128
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)