Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N11
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.3  
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             29   4.3  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_20643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 482 YAQEVGILFTASAMDMVSFDFLVNLKVPFIKIGSGGLEQLALPKVRC 622
           Y+   GI+ T  A ++   D++  +  PFIK+    LEQ A   + C
Sbjct: 71  YSLHPGIIMTDFAREISGIDYIKAVFSPFIKVFFRSLEQGAQTTICC 117


>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 280  DVTLVILSRFRYYKTRIIAAN 218
            +VTLV L +F YY+ RI+A N
Sbjct: 1135 EVTLVDLHKFNYYQLRIVAYN 1155


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 482 YAQEVGILFTASAMDMVSFDFLVNLKVPFIKIGSGGLEQLALPKVRC 622
           Y+   GI+ T  A ++   D++  +  PFIK+    LEQ A   + C
Sbjct: 228 YSLHPGIIMTDFAREISGIDYIKAVFSPFIKVFFRSLEQGAQTTICC 274


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 376 ISRKALRQPKLVGKDVR---RTQKSFGILRYTIQXIVXIRSGGRDFIHRLC 519
           +S+   R PK +  D +   RTQ  + + R  ++ +  +  GG+ +IH  C
Sbjct: 415 LSQPCARPPKFLKADEKKKSRTQCIYDLNRTDVEWLTALNRGGKTYIHVSC 465


>SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 75  LEREVDKPLLHSVNILPSHPVELEIGFSLFVFMERS 182
           L   VDK L HS+++  SH V++ +  S+ +++  S
Sbjct: 35  LSHSVDKDLSHSLDMYLSHNVDMYLSHSVDMYLSHS 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,932,800
Number of Sequences: 59808
Number of extensions: 356522
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)