Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N11
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    36   0.023
At1g80620.1 68414.m09461 ribosomal protein S15 family protein si...    28   6.2  
At2g01180.2 68415.m00028 phosphatidic acid phosphatase family pr...    27   8.2  
At2g01180.1 68415.m00029 phosphatidic acid phosphatase family pr...    27   8.2  

>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 539 DFLVNLKVPFIKIGSGGLEQLALPKVRCFEKD 634
           DFLV L++P    GSG  E L+L KVRC  KD
Sbjct: 439 DFLVLLEIPCCDNGSGESESLSLLKVRCVYKD 470


>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
           similar to ribosomal protein S15 GB:AAD36415 from
           [Thermotoga maritima]
          Length = 414

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 362 KFTKKYLERPYDNPNSWGKTYGEHKSHLE 448
           KFTK     P+ N N WG   G  K  LE
Sbjct: 275 KFTKAQKSDPFQNTNIWGVLSGTPKYMLE 303


>At2g01180.2 68415.m00028 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to phosphatidic
           acid phosphatase 2a2 [Cavia porcellus] GI:3641336;
           contains Pfam profile PF01569 PAP2 superfamily
          Length = 302

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 406 VWVVVRPF*IFFCKFLSETCLLKLH 332
           V+ V+ P  +F C +L  TC+  LH
Sbjct: 73  VYAVLLPIIVFVCFYLKRTCVYDLH 97


>At2g01180.1 68415.m00029 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to phosphatidic
           acid phosphatase 2a2 [Cavia porcellus] GI:3641336;
           contains Pfam profile PF01569 PAP2 superfamily
          Length = 327

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 406 VWVVVRPF*IFFCKFLSETCLLKLH 332
           V+ V+ P  +F C +L  TC+  LH
Sbjct: 98  VYAVLLPIIVFVCFYLKRTCVYDLH 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,221
Number of Sequences: 28952
Number of extensions: 258121
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)