Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N06
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    29   0.025
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    29   0.025
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   1.7  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   1.7  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 169 NFFTNKLKLMSFLRKRCNVNPARGPFHFXAP--SXILWKTVRGMI 297
           N+    ++ +SF  K CN+     P+ F  P     LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 169 NFFTNKLKLMSFLRKRCNVNPARGPFHFXAP--SXILWKTVRGMI 297
           N+    ++ +SF  K CN+     P+ F  P     LWK ++G++
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 607 MVLSPSTPSHQHRW*SS*VSFHR 539
           M + P +PS   +W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 607 MVLSPSTPSHQHRW*SS*VSFHR 539
           M + P +PS   +W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,749
Number of Sequences: 336
Number of extensions: 2843
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)