Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N06
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 223 1e-59
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 221 7e-59
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 213 2e-56
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.44
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 7.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 7.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 223 bits (546), Expect = 1e-59
Identities = 109/197 (55%), Positives = 133/197 (67%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXPAAL 405
NP+RG FHF APS I K VRGM+PHKT RG+ AL L+ +G PPPFD PAAL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 406 RVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDAGEK 585
RV LKPGR YC VGRLS E+GWKY D+V KLE RK + Y+ KL + A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181
Query: 586 VSKATTPFTTIIQSYGY 636
+K +P + +GY
Sbjct: 182 -AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 221 bits (540), Expect = 7e-59
Identities = 106/184 (57%), Positives = 128/184 (69%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXPAAL 405
NP+RG FHF APS I K VRGM+PHKT RG+ AL L+ +G PPPFD PAAL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 406 RVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDAGEK 585
RV LKPGR YC VGRLS E+GWKY D+V KLE RK + Y+ KL + A K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAK 183
Query: 586 VSKA 597
+ +
Sbjct: 184 AASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 213 bits (519), Expect = 2e-56
Identities = 95/157 (60%), Positives = 116/157 (73%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXPAAL 405
NP+RG FHF APS I K VRGM+PHKT RG AL L+ +G PPPFD PAAL
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 406 RVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRK 516
RV LKP R YC +GRLS E+GWKY+++V KLE RK
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRK 162
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNK 186
H L + AV K++ G K VV+RC+ I + +FF ++
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFFCSR 194
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 624 LDDGSEWCCRLRHLLTSIVGDPLKFLFI 541
L D E R+RH S+VG+P+ + +I
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYI 435
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 221 LHLLRRNDISLSLFVKKLPEMLICSQRTTTTLFPSRRTLAMTA 93
++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 316 VYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 541 YEKKLKRITNDAGEKVSKATTP 606
Y+K+LKR ND G +S P
Sbjct: 1861 YDKELKRWVNDDGSDLSNQAAP 1882
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,716
Number of Sequences: 5004
Number of extensions: 45367
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -