Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N06
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   222   2e-58
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   222   2e-58
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    29   3.8  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    28   5.0  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  222 bits (542), Expect = 2e-58
 Identities = 103/200 (51%), Positives = 137/200 (68%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF  +KLK MSFLRKR
Sbjct: 3   LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
           CN+NPARG FH+ AP  I W+TVRGM+PHKT RG  AL  LR Y+G P  +        P
Sbjct: 63  CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAP 122

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
           +A R F L+P R +C VGRLSHE+GW+++DVV KLE  RK         +KK+ ++   A
Sbjct: 123 SASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQA 181

Query: 577 GEKVSKATTPFTTIIQSYGY 636
            +  +     +  II++ GY
Sbjct: 182 KKNAAPKIAQYQKIIEALGY 201


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  222 bits (542), Expect = 2e-58
 Identities = 103/200 (51%), Positives = 137/200 (68%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF  +KLK MSFLRKR
Sbjct: 3   LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
           CN+NPARG FH+ AP  I W+TVRGM+PHKT RG  AL  LR Y+G P  +        P
Sbjct: 63  CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAP 122

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
           +A R F L+P R +C VGRLSHE+GW+++DVV KLE  RK         +KK+ ++   A
Sbjct: 123 SASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQA 181

Query: 577 GEKVSKATTPFTTIIQSYGY 636
            +  +     +  II++ GY
Sbjct: 182 KKNAAPKIAQYQKIIEALGY 201


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 433 NYCHVGRLS--HEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDAGEKV 588
           +YC  G+ S  H I WKYRD V      +        A E K   I +D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAVIVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 498 LTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRXYNTSTVIKGRRAPVIC 343
           L NNI VFPSN + +++ MT+   R +T+    S     +  I      VIC
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK----SECRKVNATINSTLCTVIC 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,293
Number of Sequences: 27780
Number of extensions: 269647
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)