Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N06
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...   197   5e-51
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...   196   1e-50
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)         196   1e-50
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...   195   2e-50
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    31   0.88 
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    28   6.2  

>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score =  197 bits (481), Expect = 5e-51
 Identities = 92/186 (49%), Positives = 122/186 (65%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           +  K +V+D R H+LGRLA+V+AK LL G  +VVVRCE+I +SG     K+K M FLRKR
Sbjct: 7   ICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKR 66

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
            N  P+ GP HF APS I W+TVRGMIPHKT RG NAL RL+ ++G P P+D       P
Sbjct: 67  MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVP 126

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
            AL+V  L+ G  YC +GRLS E+GW + D +++LE  RK  A      +K+L ++   A
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKA 186

Query: 577 GEKVSK 594
            EKV++
Sbjct: 187 -EKVAE 191


>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score =  196 bits (478), Expect = 1e-50
 Identities = 92/186 (49%), Positives = 122/186 (65%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           +  K +V+DGR H+LGRLA+  AK LL G +VVVVRCE+I +SG     K+K M FLRKR
Sbjct: 7   ICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKR 66

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
            N  P+ GP HF APS I W+TVRGMIPHKT RG  AL RL+ ++G PPP+D       P
Sbjct: 67  MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIP 126

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
            AL+V  L+ G  YC +GRLS E+GW + D +++LE  RK  +      +K+L ++   A
Sbjct: 127 DALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKA 186

Query: 577 GEKVSK 594
            EKV++
Sbjct: 187 -EKVAE 191


>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score =  196 bits (477), Expect = 1e-50
 Identities = 92/186 (49%), Positives = 122/186 (65%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           + +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG     K+K M FLRKR
Sbjct: 7   ICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKR 66

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
            N  P+ GP HF APS I W+TVRGMIPHKT RG  AL RL+ Y+G P P+D       P
Sbjct: 67  MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIP 126

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
            AL+V  L+ G  YC +GRLS E+GW + D +++LE  RK  A      +K+L ++   A
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKA 186

Query: 577 GEKVSK 594
            EKV++
Sbjct: 187 -EKVAE 191


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score =  195 bits (475), Expect = 2e-50
 Identities = 91/186 (48%), Positives = 122/186 (65%)
 Frame = +1

Query: 37  LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
           + +K +V+D R H+ GRLA++IAK LL G  VVVVRCE+I +SG     K+K M FLRKR
Sbjct: 7   ICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKR 66

Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFDNXXXXXXP 396
            N  P+ GP HF APS I W+TVRGMIPHKT RG  AL RL+ ++G PPP+D       P
Sbjct: 67  MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIP 126

Query: 397 AALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXRKGXAVXXVAYEKKLKRITNDA 576
            AL+V  L+ G  YC +GRLS E+GW + D +++LE  RK  +      +K+L ++   A
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKA 186

Query: 577 GEKVSK 594
            EKV++
Sbjct: 187 -EKVAE 191


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
 Frame = +1

Query: 55  VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFTNKLKLM 198
           V+D    +LGRLA+ IA     K L         G  V+VV  E++ +SG     KL   
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166

Query: 199 SFLRKRCNVNPARGPFHFXAPSXILWKTVRGMIPHKTXRGKNALXRLRTYDGCPPPFD 372
              R                P  I+   VRGM+P K   G+     L+ Y G   P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -2

Query: 296 IMPLTVFHRXLDGAXKWKGPRAGFTLHLLRRNDISLSLFVKKLPEM 159
           ++ L + H  LD    W+G +    LH LR+ D+S S+ +K+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,154
Number of Sequences: 28952
Number of extensions: 254579
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)