Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N05
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 41 2e-04
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.44
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 27 1.8
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 2.3
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 2.3
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 27 2.3
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 4.1
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 26 4.1
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 7.1
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +3
Query: 357 RIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLXPYFPTWLNHVMHTNIMAFILI 536
++K+IL + PL V I +W I + DR L++P+ P + +H + LI
Sbjct: 17 KLKNILLYIVC-PLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLI 75
Query: 537 DLLTSFRMYPXK-KIGLSVL--CTYMLCYMVWIHVIY 638
D L F P IG S+L + + YM+W+ Y
Sbjct: 76 DYL--FFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCY 110
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 69 QNLYIVLIHTYSNKEPTMLKILFHLLGAI 155
Q L++ ++TY N++P LK+L H G +
Sbjct: 166 QRLWLTAMNTYENQKPPNLKLLLHDHGTV 194
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 363 KDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLXPYFPTWLNHVMHTNIMAFILIDL 542
K ILFS L F +++ FW + L L YFP W H+ + A IL +L
Sbjct: 273 KQILFSLLYFSSEVYLSFVFWSV------LTSLGLLVWYFPLW--HMGISGYEACILFEL 324
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +3
Query: 114 PTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFTL 293
P M+ G + YY VH VP+ S + T + +L LN ++ F
Sbjct: 448 PMMIGCFMFPAGIFWLSWSGYYSYVHWIVPTLSGLATGCGILLIFLQCLNYLIDAYLFRA 507
Query: 294 A 296
A
Sbjct: 508 A 508
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 114 PTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFTL 293
P M+ G + YY VH VP+ S ++T + +L LN ++ F
Sbjct: 452 PMMIGSFLFPAGIFWLAWSGYYTYVHWIVPTLSGLLTGAGILLIFLQCLNYLLDAYLFRA 511
Query: 294 A 296
A
Sbjct: 512 A 512
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 451 SSLSMAYMPQNVIPTNIDSGKAKALNNISFMRLIKGXSDGVGSLFPNKSFKSANVKYK 278
S S PQ+ I +D+ +A+ + +K D GSL + +FK A Y+
Sbjct: 24 SIFSQNAAPQSPIKVFMDTFRAELKKSQELQDSVKALQDSSGSLSESDTFKKARDAYE 81
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 519 MAFILIDLLTS-FRMYPXKKIGLSVLCTYMLCYMVWIHVIYF 641
+ FI+ +L+ F++ + LS LCT+ C M I + YF
Sbjct: 469 LVFIVSVILSIYFQLGSTYWVTLSYLCTFTCCIMTIIRINYF 510
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 369 ILFSALAFPLSMFVGITFWGIYAIDRELILPRSLXPYFPTWLNHVMHTNI 518
++ S AFPLS F Y +++ + + P LN V+HTN+
Sbjct: 12 LILSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNL 61
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 159 FGYGCYYDQVHVNVPSTSAIVTPYAGKMK 245
F YG + V VP T+AIV P A + +
Sbjct: 133 FAYGIHKALVVARVPLTAAIVPPLAKRFR 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,631
Number of Sequences: 5004
Number of extensions: 63568
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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