Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N05
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    30   1.8  
12_01_0783 + 7164963-7165056,7165694-7165953                           29   2.4  
03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865...    29   4.2  
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617     28   5.6  
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935...    28   7.4  
04_04_0342 - 24522035-24522869,24523001-24523137,24523243-245236...    28   7.4  
08_02_1116 + 24400212-24400401,24402258-24402576,24403297-244034...    27   9.7  

>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 422 LGHIRHRQ-RAHFTKKLXP--IFSYMAESCNAHKHNGIYSN*FVNILQNVSXEENWTICT 592
           LGH  +   +  FT  + P  I +YM ++    KH+  YSN  V     V  +  W +  
Sbjct: 287 LGHFSYSAIQLAFTSLVYPALILAYMGQAAYLSKHHDFYSNSQVGFYIAVPDKVRWPVLV 346

Query: 593 LYIYVVLHG 619
           L I   + G
Sbjct: 347 LAILASVVG 355


>12_01_0783 + 7164963-7165056,7165694-7165953
          Length = 117

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 75  LYIVLIHTYSNKEPTMLKILFHLLGAIHFG 164
           +Y++++ T     PTML I+ +L G +H G
Sbjct: 30  IYVLIVMTNMGNIPTMLNIVSYLHGTMHMG 59


>03_02_0460 -
           8654283-8654302,8654669-8654847,8654940-8655125,
           8655626-8655781,8656223-8656431,8657254-8657358
          Length = 284

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 351 IRRIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLXP--YFPTWLNHVMHTNIMA 524
           +R+ K + FS   + L+ +  +  W +  I +E   P SL    YF  W N  M +++M 
Sbjct: 54  VRQAKIVKFSESIWKLTYYGSVQAWVLLIIKQE---PWSLDTMQYFEGWPNQYMTSSLML 110

Query: 525 FIL 533
           F +
Sbjct: 111 FYM 113


>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
          Length = 507

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 147 GAIHFGYGCYYDQVHVNVPSTSAIVTP 227
           G + +G+G    QVHV+V S++A V P
Sbjct: 341 GLLQYGFGITTPQVHVDVTSSAAGVLP 367


>11_04_0470 -
           18092681-18092695,18092725-18092811,18093528-18093593,
           18093696-18093740,18093850-18093903,18093987-18094082,
           18094161-18094241,18095634-18095714,18095798-18095884,
           18095976-18096074,18096644-18096769,18098162-18098248,
           18098321-18098389,18098711-18098806,18099053-18099169,
           18099710-18099790,18099873-18100010,18100307-18100580,
           18100735-18100830,18101612-18101757,18102883-18103141,
           18103434-18103537,18103623-18103748,18103872-18103982,
           18104200-18104304
          Length = 881

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 509 VHYMIQPCRKIWV*ASW 459
           +HY+++P  KIWV + W
Sbjct: 157 LHYLLKPLNKIWVQSEW 173


>04_04_0342 -
           24522035-24522869,24523001-24523137,24523243-24523683,
           24523879-24524096,24524263-24524350
          Length = 572

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/95 (26%), Positives = 39/95 (41%)
 Frame = +3

Query: 33  VNSRLLFHVRN*QNLYIVLIHTYSNKEPTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTS 212
           +N ++   VR    +Y + + T +   P ML ++ +L G +H G           + S+S
Sbjct: 14  INRKVHGGVRAAWFVYFLTVVTSTVNVPNMLNMVTYLYGTMHMG-----------ISSSS 62

Query: 213 AIVTPYAGKMKYLTHLNAIMQTLYFTLALLNDLFG 317
             VT   G       L A +   Y T A    LFG
Sbjct: 63  TTVTNVLGATSGFALLGAFLSDSYITRARTILLFG 97


>08_02_1116 +
           24400212-24400401,24402258-24402576,24403297-24403480,
           24403752-24403971,24404282-24404427,24404533-24404571,
           24404990-24405061
          Length = 389

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 465 SLXPYFPTWLNHVMHTNIMAFILIDLLTSFRMYP 566
           S  P    W  HV    ++ +I +DL  SF  YP
Sbjct: 109 SSSPASHVWARHVKDWGLIFYIRVDLQGSFHTYP 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,257,170
Number of Sequences: 37544
Number of extensions: 358391
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)