Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N05
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)          78   5e-15
SB_26710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
          Length = 227

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 45/176 (25%), Positives = 81/176 (46%)
 Frame = +3

Query: 111 EPTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFT 290
           E +  ++ FH   ++    G  Y  + V++P+ S     + G+ ++LT +N + Q L+FT
Sbjct: 2   EASKTRLFFHYSCSMIHLIGISYHCMEVHLPTYSL----FGGRFRFLTFINMVWQWLFFT 57

Query: 291 LALLNDLFGNNEPTPSXKPLIRRIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSL 470
           +  + +     +       L+  + D L++   FPL + V   FWG+  ID   I  +  
Sbjct: 58  ILAVLEFQALTKKRKHE--LVASLCDFLYAGWTFPLGITVAALFWGLCIIDPHAIQSKED 115

Query: 471 XPYFPTWLNHVMHTNIMAFILIDLLTSFRMYPXKKIGLSVLCTYMLCYMVWIHVIY 638
               P WLNH MH+     ++++       YP +  GL  +    L Y  W+ VI+
Sbjct: 116 LEQIPLWLNHYMHSFPGLSVILETFLFKHEYPTRSNGLKAVFGLTLGYTAWMVVIF 171


>SB_26710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 159 FGYGCYYDQVHVNVPSTSAIV-TPYAGKMKYLTHLNAIMQTLYFTLALL 302
           +GY  Y   VH+ V +T  I+       + Y  H++  ++ +Y  +A L
Sbjct: 114 YGYDLYVSPVHITVVTTLKILGVTMDSSLSYKRHISTALKKVYAKVAAL 162


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 512 KHNGIYSN*FVNILQNVSXEENWTI----CTLYIYVVLHGLDSCNIF 640
           + NGI ++  + +    +    W+I     +   Y+VLH L+SC I+
Sbjct: 627 QRNGIITSYDLELSSGQARRRRWSIPESFTSTLTYIVLHNLESCTIY 673


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 385 KALNNISFMRLIKGXS-DGVGSLFPNKSFKSANVKYKVCIIAFKWVKYFIFPAYGVTMAE 209
           K L+++  M LI   S + +G     K+ +  + KY + ++  +W+ Y I   Y    AE
Sbjct: 723 KTLDSVLRMELISELSGEEIGKANVYKTIEERSTKYPLSVVDAQWLAYQIQMYYASDSAE 782


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,874
Number of Sequences: 59808
Number of extensions: 451345
Number of successful extensions: 1001
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)