Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N05
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    33   0.12 
At5g46500.1 68418.m05726 expressed protein                             31   0.87 
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ...    30   1.2  
At5g58920.1 68418.m07381 expressed protein                             29   3.5  
At2g18690.1 68415.m02177 expressed protein                             27   8.1  

>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -3

Query: 448 SLSMAYMPQNVIPTNIDSGKAKALNNISFMRLIKGXSDGVGSLFPNKSFKSANVKYKVCI 269
           SLS +  P    PT   SG     N  +  ++  G SD  GS   N   K+++   K+ +
Sbjct: 260 SLSPSLSPTKPAPTRPFSGVPPPPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKKIIL 319

Query: 268 IAFKWVKYFI 239
           IAF  V  FI
Sbjct: 320 IAFAGVLVFI 329


>At5g46500.1 68418.m05726 expressed protein
          Length = 417

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 51  FHVRN*QNLYIVLIHTYSNKEPTMLKILFHLL----GAIHFGYGCYYDQVHVNVPSTSAI 218
           FHV +  + Y+ L+ T S K   ML IL   +    G      G YYD V +N+  T ++
Sbjct: 158 FHVGS-DDFYVYLLFTKSQKGSQMLTILDCCIPLNEGNASLAQGNYYDHVDINIHITESL 216


>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
           Pfam profilePF03107: DC1 domain
          Length = 569

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 191 CECSEHFSHCHSICWKDEILDPFECYYANFVFH 289
           CE  E   HCH IC K+ + +P++C   NFV H
Sbjct: 400 CEL-EGKEHCH-ICEKEILGNPWKCETCNFVTH 430


>At5g58920.1 68418.m07381 expressed protein
          Length = 162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 558 MYPXKKIGLSVLCTYMLCYMVWIH 629
           M+  K++G ++LCTY +  M WI+
Sbjct: 35  MFFWKQVGKALLCTYTIFGMAWIY 58


>At2g18690.1 68415.m02177 expressed protein
          Length = 322

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 342 KPLIRRIKDILFSALAFPLSMFVGITFWGIYAIDRE---LILPRSLXP 476
           + L  + K ++FS L FPL +   + F  I+ I  E   LIL  SL P
Sbjct: 21  RKLFLKNKKLMFSVLVFPLLLNCLVYFLNIFVIVPEITNLILEASLLP 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,712
Number of Sequences: 28952
Number of extensions: 311240
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)