Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_N04
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 170 4e-43
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 166 9e-42
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 1.4
At5g23040.2 68418.m02694 expressed protein similar to unknown pr... 29 2.4
At5g23040.1 68418.m02693 expressed protein similar to unknown pr... 29 2.4
At5g26850.1 68418.m03203 expressed protein 28 4.2
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin... 27 5.5
At1g48250.1 68414.m05388 hypothetical protein 27 7.3
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 27 9.6
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 170 bits (414), Expect = 4e-43
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Frame = +3
Query: 69 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 245
M+E TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +FVF
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 246 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 425
F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 426 G 428
G
Sbjct: 121 G 121
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 166 bits (403), Expect = 9e-42
Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Frame = +3
Query: 69 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 245
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 246 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 425
F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 426 G 428
G
Sbjct: 121 G 121
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 228 DVVFVFGFKTNFGGGKSTGFALIYDT 305
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 237 FVFGFKTNFGGGKSTGFALIYDT 305
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At5g23040.2 68418.m02694 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 125 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKSREKK 3
QQ GHE + + +F + S IRR +++ KS+ KK
Sbjct: 93 QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKK 133
>At5g23040.1 68418.m02693 expressed protein similar to unknown
protein (emb|CAB62636.1)
Length = 258
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 125 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKSREKK 3
QQ GHE + + +F + S IRR +++ KS+ KK
Sbjct: 93 QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKK 133
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 260
M +++ ++ D++ P +SK E + K+ + + TPD F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 370
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 278 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 436
N F++++ S V A+ +V PP PVR +A + Q E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255
>At1g48250.1 68414.m05388 hypothetical protein
Length = 354
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 149 CFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIR--FDLRHTRSGQE 322
C R++ R+Q+R EA V+ +R + ++ L + H SG E
Sbjct: 149 CSPLRRSKRRQNRLEEEADVAVEESTRREIGQEEEEALGETSCGGEEEAHEEAHIESGVE 208
Query: 323 VRAQAQVSPPRPVREEE 373
VRA + S R +R+EE
Sbjct: 209 VRAPLRRSKRRRIRDEE 225
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 292 KANPVD-LPPPKFVLKPNTNTTSGV 221
K N ++ PP+ +L+P TNT SG+
Sbjct: 82 KMNTIEKFAPPRKILEPTTNTISGL 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,206,803
Number of Sequences: 28952
Number of extensions: 232882
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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