Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M24
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   2.4  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    25   7.2  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   9.5  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +1

Query: 313 TLIIRIKX*SFVHXFIVYSTLTVHAXSNARAT--HLSRARDD--NVKKGNASGNSECSKR 480
           T +I +K   F+H F +           A+ +   L R+ D+  +VK+       E  K 
Sbjct: 23  TTLISLKENVFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH 82

Query: 481 NNMETLAQGENFERKDATSQEKGSTENXXE 570
              +  A  +   +KD    +KG ++   E
Sbjct: 83  KKDKPSADKDRISKKDKKKSKKGKSKTKEE 112


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 523 CVRNFRPALGFPCCSAY--CIHCYHLHCLS 440
           C  N   A    C  A+  C H +H HC+S
Sbjct: 55  CQANTDSAAAQECTVAWGTCNHAFHFHCIS 84


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 99  LTTRAYTQQKGLMPFRTQKLRKY 31
           L TR+Y    GL P R QKL  +
Sbjct: 38  LRTRSYALASGLHPLRKQKLAHF 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,816
Number of Sequences: 5004
Number of extensions: 37996
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)