BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_M24 (653 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 2.4 SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 25 7.2 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 9.5 >SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 578 Score = 27.1 bits (57), Expect = 2.4 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Frame = +1 Query: 313 TLIIRIKX*SFVHXFIVYSTLTVHAXSNARAT--HLSRARDD--NVKKGNASGNSECSKR 480 T +I +K F+H F + A+ + L R+ D+ +VK+ E K Sbjct: 23 TTLISLKENVFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH 82 Query: 481 NNMETLAQGENFERKDATSQEKGSTENXXE 570 + A + +KD +KG ++ E Sbjct: 83 KKDKPSADKDRISKKDKKKSKKGKSKTKEE 112 >SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 107 Score = 25.4 bits (53), Expect = 7.2 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Frame = -2 Query: 523 CVRNFRPALGFPCCSAY--CIHCYHLHCLS 440 C N A C A+ C H +H HC+S Sbjct: 55 CQANTDSAAAQECTVAWGTCNHAFHFHCIS 84 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 25.0 bits (52), Expect = 9.5 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -3 Query: 99 LTTRAYTQQKGLMPFRTQKLRKY 31 L TR+Y GL P R QKL + Sbjct: 38 LRTRSYALASGLHPLRKQKLAHF 60 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,180,816 Number of Sequences: 5004 Number of extensions: 37996 Number of successful extensions: 66 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 66 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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