Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M24
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1148 - 34458732-34460627,34462299-34462547                       31   0.80 
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927     29   4.3  
03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434...    28   5.6  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   7.5  
08_01_0074 + 530207-532603                                             27   9.9  
05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017...    27   9.9  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   9.9  

>02_05_1148 - 34458732-34460627,34462299-34462547
          Length = 714

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
           +C+   +P  G    +A C H +H HC++
Sbjct: 88  ICLTTMKPGQGHALFTAECSHTFHFHCIA 116


>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
          Length = 468

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 394 NARATHLSRARDDNVKKGNASGNSECSKRNNMETLAQGENFERKD 528
           NARA    R+R ++   G  SG +EC   ++   L+ G N  RKD
Sbjct: 255 NARAGD-GRSRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKD 298


>03_01_0586 -
           4339090-4339194,4340186-4340366,4340531-4340601,
           4340689-4340826,4341342-4342337
          Length = 496

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 448 NASGNSECSKRNNMETLAQGENFERKDATSQEKGSTENXXEXXXXXXXXXXXXXXDITSN 627
           +A+ N+  S+ +++    +G +  RK    QEK  +EN  E               +TSN
Sbjct: 8   SANPNNHRSRSSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSN 67

Query: 628 KRQHA 642
            R  A
Sbjct: 68  SRPQA 72


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
           +C  + R   G    +A C H +H HC+S
Sbjct: 95  ICFDSMRHGNGQALFTAECSHMFHFHCIS 123


>08_01_0074 + 530207-532603
          Length = 798

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 IVYSTLTVHAXSNARATHLSRARDDNVKKGNASGNS 465
           + Y+TL V+   N R+    +  D  VKKG+   +S
Sbjct: 277 VTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSS 312


>05_07_0034 -
           27200513-27200605,27200750-27200802,27201724-27201797,
           27202762-27202830,27203070-27204148
          Length = 455

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 517 RNFRPALGFPCC 482
           R++RPAL FPCC
Sbjct: 159 RHYRPALRFPCC 170


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCL 443
           +C    RP+     CSA C    HLHC+
Sbjct: 111 ICFDPIRPSDPVWSCSASCFALLHLHCI 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,944
Number of Sequences: 37544
Number of extensions: 215919
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)