Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M24
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)              28   7.6  
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 450 IAFLDVIIPCATEVCCSRVTXCMNCEC 370
           +AFLD+ +PCA   CC  +      +C
Sbjct: 85  VAFLDIDVPCAVTCCCCSLDGFGKAQC 111


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 486 VVPLTAFTV--TTCIAFLDVIIPCATEVCCSRVTXCMNCECRIYYKXMDETSXFYAYYQR 313
           VV LTA  V  T C+  L   +   T  C  R+T C+  +     +  D T+ + AYYQ+
Sbjct: 518 VVRLTACVVRLTACVVRLTACVVRLT-ACVVRLTACVGQQVAGQGQQQDYTAAWAAYYQQ 576


>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 418 RARDDNVKKGNASGNSECSKRNNMETLAQGENFERKDATSQ--EKGSTENXXE 570
           R  ++  ++GN  GN E ++  N E   +G   E +D   +  E+G+ E   E
Sbjct: 9   RCNEEGNEEGNEKGNDEVNEGGNEEGNEEGNEEENEDGNEEENEEGNEEGNEE 61


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 355 FIVYSTLTVHAXSNARATHLSRARDDNVKKGNASGN-SECSKRNNMETLAQGENFERKDA 531
           F   S + + +    R     +A+ DN ++ + +G+ SE  KR ++    +GE    K+ 
Sbjct: 103 FAFNSNVFLSSAKKGREKKAPKAQRDNERRESTAGSESERDKRKSLSGDVEGETLHLKEL 162

Query: 532 TSQEK 546
           T ++K
Sbjct: 163 TPEDK 167


>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
          Length = 455

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 526 LCVRNFRPALGFPCCSAYCIHC 461
           +C+ +F      PC  ++C+HC
Sbjct: 17  ICIEHFNDPRVLPCFHSFCLHC 38


>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 486 VVPLTAFTVTTCIAFLDVIIPCATEVCCSRVTXCM 382
           +V +T  T+ TC+     I+ CAT V C  V  C+
Sbjct: 37  IVAVTLTTIFTCVT----IVTCATVVTCVTVITCV 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,432
Number of Sequences: 59808
Number of extensions: 287250
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)