Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M24
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 2.0
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 29 3.6
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 29 3.6
At2g24480.1 68415.m02925 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At1g15620.1 68414.m01877 expressed protein ; expression supporte... 28 4.7
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 27 8.2
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 27 8.2
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 370 TLTVHAXSNARATHLSRARDDNVKKGNASG-NSECSKRNNMETLAQGENFERKDATSQE 543
T+ V + + T + KK +G + + K+NN ET+++G+ +R + +E
Sbjct: 897 TVDVKQETGSPDTKKKEGASSSSKKDTKTGEDKKAEKKNNSETMSEGKKIDRNNTDEKE 955
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -2
Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
+C+ + G +A C H +H HC++
Sbjct: 77 ICLNKMKEGCGHAIFTAECSHMFHFHCIA 105
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -2
Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
+C+ + G +A C H +H HC++
Sbjct: 76 ICLNKMKEGCGHAIFTAECSHMFHFHCIA 104
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 602 DDTTPLLSCELSXXFSVD-PFSCEVASLRSKFSP 504
DD PLLSCELS VD +C + L + F P
Sbjct: 209 DDGKPLLSCELSDSVKVDIDLTCSIC-LDTVFDP 241
>At2g24480.1 68415.m02925 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 198
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
+C+ N + + C YC HCYH C++
Sbjct: 152 ICLENMSRSENY-CQMPYCKHCYHEGCVT 179
>At1g15620.1 68414.m01877 expressed protein ; expression supported
by MPSS
Length = 343
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 468 FTVTTCIAFLDVIIPCATEVCCSRVTXCMN 379
F V CI ++ ++ CA CC +T C N
Sbjct: 310 FLVFGCIRYVLPMVICAATCCCVFMTLCFN 339
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1016
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCL 443
+C RN P F C YC H+ C+
Sbjct: 938 VCERNLNPKERFYKCDEYCSITLHIECM 965
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -2
Query: 526 LCVRNFRPALGFPCCSAYCIHCYHLHCLS 440
+C+ + G +A C H +H HC++
Sbjct: 74 ICLNKMKEGGGHALFTAECSHSFHFHCIA 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,026,808
Number of Sequences: 28952
Number of extensions: 187206
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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