Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M22
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    78   4e-16
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   2.9  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   3.8  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   3.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   6.7  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    24   8.8  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 78.2 bits (184), Expect = 4e-16
 Identities = 33/51 (64%), Positives = 41/51 (80%)
 Frame = +1

Query: 172 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNL 324
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G +
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTV 51


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 116 VGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAK 217
           +G+Y     ++Y   NS+ W++ R+     KTAK
Sbjct: 249 IGLYMAGAAYMYNYTNSTVWKT-RVEGFANKTAK 281


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 172 MAKSKNHTNHNQNRKAHRNGIKKPRK 249
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 152  RIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 286
            + E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 997  KFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 203 TKTAKLTEMVSKSQGRPGTN 262
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 190 HTNHNQNRKAHRNGIKKPRKTRHES 264
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 307 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 221
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 122 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGT 259
           IYSND     R++ +S    QRI      T   TE V+ +   P +
Sbjct: 243 IYSNDSFQDPRVQANSPLTIQRISSAAPSTPTSTENVNYNMTTPSS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,972
Number of Sequences: 5004
Number of extensions: 22185
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)