Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M22
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 83 7e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 5e-09
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 30 0.50
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 2.0
06_03_0336 + 19671500-19672150,19672681-19673301 27 3.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 4.7
08_02_0588 + 19036509-19039235 27 6.2
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 27 6.2
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 6.2
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 83.0 bits (196), Expect = 7e-17
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 172 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 321
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K N
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHN 50
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 5e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +1
Query: 172 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 279
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 30.3 bits (65), Expect = 0.50
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 RCVGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAKL-TEMVSKSQGRPGTNPPLAW 277
RC G + + LY + + W + Q +T + ++ GR GTNPP W
Sbjct: 4 RCSGSHGRQLLLLYWLVIACSWVAAAQAQQAPRTDPVEVAALNAILGRWGTNPPKTW 60
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 235 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 318
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 270 WHGSKIFKESKVLQEG*PEASQATREGG 353
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 372 SGSFSXSRPRELLGWLQVTLLAKPLIP 292
SG F S+P +L WLQ + A P P
Sbjct: 1889 SGDFESSKPNKLPHWLQEAVRAPPSKP 1915
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 342 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 250
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 122 IYSNDFIFLYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQG 247
+ D + RIEN +RI++ TK +KL ++ K++G
Sbjct: 214 VEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEG 255
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 211 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 309
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,693
Number of Sequences: 37544
Number of extensions: 132294
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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