Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    81   1e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    81   1e-16
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   1.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.1  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   5.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.5  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLAQ 318
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV 202
           MGI+RD  HKR ATG +   + ++ +      R     R     +  V V       R +
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58

Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHYT 379
                +    +  ++K   ++    H + N  V+   L K+AIV  DA PFR WYE+HY 
Sbjct: 59  RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 380 LPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTGXFAGLRGES 559
           + +G  KG K T          +S+   RK+ AR   +KV+ AL  QF  G    +    
Sbjct: 119 ILMG-SKGKKATSTPN-----PKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172

Query: 560 P 562
           P
Sbjct: 173 P 173



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKI 632
           GRL A V+SRPGQ GR DGYIL+G+ L FYL ++
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +3

Query: 72  KRAPIRKKRKYELGRPAANTRLGPQRIH 155
           KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLAQ 318
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV 202
           MGI+RD  HKR ATG +   + ++ +      R     R     +  V V       R +
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58

Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHYT 379
                +    +  ++K   ++    H + N  V+   L K+AIV  DA PFR WYE+HY 
Sbjct: 59  RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 380 LPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTGXFAGLRGES 559
           + +G  KG K T          +S+   RK+ AR   +KV+ AL  QF  G    +    
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172

Query: 560 P 562
           P
Sbjct: 173 P 173



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKI 632
           GRL A V+SRPGQ GR DGYIL+G+ L FYL ++
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +3

Query: 72  KRAPIRKKRKYELGRPAANTRLGPQRIH 155
           KRA  RKKRK+ELGR  +NTR+GP+RIH
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIH 44


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 458 TARKYLARQRLAKVEGALXEQFHTGXFAGLRGESPRSVWSR 580
           T RKYL +   A +EGA  +Q  +   A +R ES  +VWSR
Sbjct: 431 TCRKYLPKMHDANLEGANIDQ--SVLMASVR-ESLPAVWSR 468


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 88   RMGARFPAGGPSLMPVIPTNTHLSWVE 8
            RM   F      L+PVI T THLS VE
Sbjct: 1196 RMSVDFSEKYTQLIPVITTYTHLSEVE 1222


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 590 VTIGATTLTWATRHASQQTXLC 525
           +T+G T+L+W+ RH+ +    C
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSAC 350


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 284 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 198
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 208 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 68
           CPD + G  Y     V +  ++R  PS+++A    ++  LF+R+  ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 181  TKYRALRLDTGNFSWGSECSTRKTRI 258
            T YRA+ LDTG+     E +  K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,770
Number of Sequences: 5004
Number of extensions: 48343
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)