Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M18
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 93 1e-19
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 93 2e-19
01_06_0657 - 30940020-30940034,30940226-30940861 32 0.35
01_02_0013 + 10162478-10163581 29 2.4
03_01_0350 - 2753217-2754152 29 4.3
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 5.6
05_05_0049 - 21895172-21895181,21895297-21896717 28 7.5
06_01_1182 + 10150911-10150979,10150984-10151457 27 9.9
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 9.9
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +1
Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
P T S+ R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELV
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELV 92
Query: 298 RTKTLAQ 318
RT+TL +
Sbjct: 93 RTQTLVK 99
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +3
Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
GRLLAC++SRPGQCGRADGYIL+GK LEFY+ K+ + K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 54.8 bits (126), Expect = 6e-08
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSAN-PLRFVHVVEILSTVRC 199
MGISRD HKRRATG + A ++ + R + S+N +R V V R
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRK--YELGRQPANTKLSSNKTVRRVRVRGGNVKWRA 58
Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHY 376
+ + + + + ++ + + + N V+ + L+K+AIV DA PF+QWY +HY
Sbjct: 59 LRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 377 TLPLGRXKGA 406
+ +GR K A
Sbjct: 119 GVDIGRKKKA 128
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/67 (67%), Positives = 51/67 (76%)
Frame = +1
Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
P T S+ R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELV
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELV 92
Query: 298 RTKTLAQ 318
RT+TL +
Sbjct: 93 RTQTLVK 99
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +3
Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
GRLLAC++SRPGQCGRADGYIL+GK LEFY+ K+ + K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Score = 60.9 bits (141), Expect = 9e-10
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 10/180 (5%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSAN-PLRFVHVVEILSTVRC 199
MGISRD HKRRATG + A ++ + R + S+N +R V V R
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRK--YELGRQPANTKLSSNKTVRRVRVRGGNLKWRA 58
Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHY 376
+ + + + + ++ + + + N V+ + L+K+AIV DA PF+QWY +HY
Sbjct: 59 LRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
Query: 377 TLPLGRXK--------GAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTG 532
+ +GR K A+ E A +S RK RQ+ ++ + EQF +G
Sbjct: 119 GVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GSLA*AKGHRLGNVRPYARRGSMS*GVPLQTPGSALSESTPXRSRGGNTKYRALRL-DTG 213
G++ A G+R+ P R GSMS G + GS++S S RG + + A G
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHSAGVSGRGSSMSHGATGYGGFG 176
Query: 214 NFSWGSECSTRKT 252
W + S+ T
Sbjct: 177 GGGWDAGTSSAPT 189
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 176 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 313
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 45 GISEGPPAGKRAPIRKKRKYELGRPAANTR 134
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 217 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLAQE 321
F W C+T ++ V + S +EL+ T + Q+
Sbjct: 728 FQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQD 762
>05_05_0049 - 21895172-21895181,21895297-21896717
Length = 476
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 113 ASRCKHQARPSANPLRFVHVVEILSTVRCV 202
A C+H+ RP+ +PL F + ++ ++T V
Sbjct: 324 AVNCRHRLRPAISPLYFGNAIQSVATTATV 353
>06_01_1182 + 10150911-10150979,10150984-10151457
Length = 180
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 446 RSQKTARKYLARQRLAKVEGALXEQFHTGXFAGLRGESPRSVW 574
RS R +L R + A+ + H G G+RG PR W
Sbjct: 8 RSVLLQRLFLCRCWIGVDTEAVEAEVHNGGRVGVRGSKPREGW 50
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 292
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,038
Number of Sequences: 37544
Number of extensions: 359951
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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