Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M18
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)               95   6e-20
SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           30   1.9  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 43/54 (79%), Positives = 46/54 (85%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLAQEC 324
           R+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVYNASNNELVRTKTL + C
Sbjct: 31  RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNC 84



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/76 (50%), Positives = 49/76 (64%)
 Frame = +2

Query: 305 RPLLKNAIVVXDATPFRQWYESHYTLPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQ 484
           + L+KN IV  D+TPFRQWYE+HY +P+GR K  + TE  + I+N  RS    RK  AR+
Sbjct: 78  KTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARK 137

Query: 485 RLAKVEGALXEQFHTG 532
             AKV   + EQF TG
Sbjct: 138 ANAKVAPGMEEQFVTG 153



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
           GRL ACV+SRPGQ GR DGYIL+GK LEFY+ K+ + +AK
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +3

Query: 81  PIRKKRKYELGRPAANTRLGPQRIH 155
           P+R KRK+ELGRP ANT++G +RIH
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIH 28


>SB_20235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 227 PQEKLPVSRRSARYLVFPPRERXGVDSLRAEPGVCS 120
           P+   P+ R  ARY+V   R R  VDS +A   V S
Sbjct: 28  PEPDFPIDRARARYMVGSARARYPVDSAKARSPVDS 63


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/52 (25%), Positives = 31/52 (59%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLAQ 318
           ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    + +
Sbjct: 44  KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVK 95


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 118  PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFS 222
            P     ++++   P   +GGN +YR +  DTG FS
Sbjct: 1630 PFNFQVTSITALDPDTGQGGNVEYRIVSPDTGKFS 1664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,799
Number of Sequences: 59808
Number of extensions: 403888
Number of successful extensions: 1094
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)