Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   108   3e-24
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    33   0.18 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.18 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.18 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    33   0.18 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    33   0.18 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    33   0.18 
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    28   6.7  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.7  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  108 bits (260), Expect = 3e-24
 Identities = 67/185 (36%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +2

Query: 23  MGISRDHWHKRRATG-WETCAHTQEEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRC 199
           MGISRD WHKR  TG  +   H + +       R     +  A+ +R V         R 
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRK---FELGRPAANTKIGAHRVRLVRTRGGNEKYRA 57

Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHY 376
           +     +    + Q  +   ++  + + T N  V+ + L+K AI+  DA PFRQWYE+HY
Sbjct: 58  LRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHY 117

Query: 377 TLPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTGXFAGLRGE 556
            LPL R K AKL+E   AI+N  RS  T +KY  RQ+ A V+  L EQF+TG        
Sbjct: 118 ALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISS 177

Query: 557 SPRSV 571
           SP  V
Sbjct: 178 SPGQV 182



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
           GRLLA ++S PGQ G+A+GYIL+GK L+FYL KI + +AK
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 139 ALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           A  E +P  S        A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 595 AAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 287 MNWCVQRPLLKNAIVVXDATPFRQWYESHYT 379
           M+W V++ L ++      A P+RQWY S  T
Sbjct: 697 MDWHVKQNLARHGSNNSAAVPYRQWYPSTST 727


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 296 TNSLLDALYTTSMIRVLRV 240
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,585
Number of Sequences: 27780
Number of extensions: 285351
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)