SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M18
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   128   3e-32
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  128 bits (310), Expect = 3e-32
 Identities = 80/178 (44%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSAN----PLRFVHVVEILS- 187
           MGISRDHWHKRRATG +           +R  R     RP+AN    P R +H V     
Sbjct: 1   MGISRDHWHKRRATGGKRKP--------IRKKRKFELGRPAANTKLGPQR-IHTVRTRGG 51

Query: 188 --TVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQ 358
               R +     +    +    +   ++  + + + N  V+ + L+KNAIV  DATPFRQ
Sbjct: 52  NKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQ 111

Query: 359 WYESHYTLPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTG 532
           WYE HY LPLGR +GAKLTEA E ++N  RS+K   KY ARQR AKVE AL EQF TG
Sbjct: 112 WYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATG 169



 Score =  105 bits (251), Expect = 5e-25
 Identities = 51/83 (61%), Positives = 57/83 (68%)
 Frame = +1

Query: 70  GNVRPYARRGSMS*GVPLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
           G  +P  ++     G P              R+RGGN KYRALRLDTGNFSWGSEC+TRK
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRK 75

Query: 250 TRIIDVVYNASNNELVRTKTLAQ 318
           TRIIDVVYNASNNELVRTKTL +
Sbjct: 76  TRIIDVVYNASNNELVRTKTLVK 98



 Score = 68.9 bits (161), Expect = 4e-14
 Identities = 28/40 (70%), Positives = 35/40 (87%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
           GR+LAC++SRPGQCGR DGYIL+GK LEFY+ +I S +AK
Sbjct: 169 GRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKAK 208



 Score = 61.3 bits (142), Expect = 8e-12
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQRIHS 158
           GKR PIRKKRK+ELGRPAANT+LGPQRIH+
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHT 45


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 367 LIPLPEWSCIXYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 308 PLLKNAIVVXDATPFRQWYESHYTLP 385
           P + +A V    TP ++ ++ HY +P
Sbjct: 186 PTVTSACVGSAYTPLKEDHDDHYGVP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,615
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -