Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M18
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...    96   2e-20
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...    93   1e-19
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    29   2.7  
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    29   2.7  
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    29   2.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 45/67 (67%), Positives = 52/67 (77%)
 Frame = +1

Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           P  T  S+       R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELV
Sbjct: 33  PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELV 92

Query: 298 RTKTLAQ 318
           RTKTL +
Sbjct: 93  RTKTLVK 99



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +3

Query: 531 GRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
           GRLLAC++SRPGQCGRADGYIL+GK LEFY+ KI   + K
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANP-LRFVHVVEILSTVRC 199
           MGISRD  HKRRATG +     ++ +      R     + S+N  +R + V       R 
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKY--EMGRQPANTKLSSNKTVRRIRVRGGNVKWRA 58

Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHY 376
           +     +    +    +   ++  + + + N  V+ + L+K+AIV  DA PF+QWY SHY
Sbjct: 59  LRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHY 118

Query: 377 TLPLGR-XKGAKLT-----EAXEAII----NXXRSQKTARKYLARQRLAKVEGALXEQFH 526
            + LGR  K A  T     E  EA +       +S    RK  +RQ    ++  + +QF 
Sbjct: 119 GVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFA 178

Query: 527 TG 532
           +G
Sbjct: 179 SG 180



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYE+GR  ANT+L   +
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNK 42


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 45/67 (67%), Positives = 50/67 (74%)
 Frame = +1

Query: 118 PLQTPGSALSESTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           P  T  S+       R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELV
Sbjct: 33  PANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELV 92

Query: 298 RTKTLAQ 318
           RT+TL +
Sbjct: 93  RTQTLVK 99



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +3

Query: 525 TQGRLLACVASRPGQCGRADGYILQGKXLEFYLTKIXSNRAK 650
           + GRLLAC+ASRPGQCGRADGYIL+GK LEFY+ K+   + K
Sbjct: 164 SSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANP-LRFVHVVEILSTVRC 199
           MGISRD  HKRRATG +     ++ +      R     + S+N  +R + V       R 
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKY--ELGRQPANTKLSSNKTVRRIRVRGGNVKWRA 58

Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLLKNAIVVXDATPFRQWYESHY 376
           +     +    +  + +   ++    + + N  V+ + L+K+AIV  DA PF+Q Y  HY
Sbjct: 59  LRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHY 118

Query: 377 TLPLGRXKGAKLTEAXEAIINXXRSQKTARKYLARQRLAKVEGALXEQFHTG 532
            + +GR K  +     E      +S    RK   RQ    ++  L EQF +G
Sbjct: 119 GVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSG 166



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYELGR  ANT+L   +
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNK 42


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 302 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPRERXG 156
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P    G
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSPLSNSG 626


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 92  EEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV--WTPVTSLGDRNVQLAKPVS 259
           E EV +R     H  RP++N L FV + E  STV+CV   +  T +G   V+  K +S
Sbjct: 107 ESEVLIRGR--VHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 92  EEEV*VRASRCKHQARPSANPLRFVHVVEILSTVRCV--WTPVTSLGDRNVQLAKPVS 259
           E EV +R     H  RP++N L FV + E  STV+CV   +  T +G   V+  K +S
Sbjct: 107 ESEVLIRGR--VHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,983
Number of Sequences: 28952
Number of extensions: 266048
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)