Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M17
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB747D Cluster: PREDICTED: similar to CG8669-PA,...    34   3.3  
UniRef50_UPI0000D9D19D Cluster: PREDICTED: tubulin tyrosine liga...    33   4.4  
UniRef50_Q14679 Cluster: Tubulin--tyrosine ligase-like protein 4...    33   4.4  

>UniRef50_UPI0000DB747D Cluster: PREDICTED: similar to CG8669-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG8669-PA, isoform A - Apis mellifera
          Length = 357

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = +3

Query: 474 LLQQLDSQCKQENIFSNWLXEKVDLPSIFENI 569
           LL++LD   K+E  FS+WL EK++LP IFE +
Sbjct: 64  LLEKLDEWIKEEP-FSDWLEEKIELP-IFEEL 93


>UniRef50_UPI0000D9D19D Cluster: PREDICTED: tubulin tyrosine
           ligase-like family, member 4 isoform 2; n=2;
           Catarrhini|Rep: PREDICTED: tubulin tyrosine ligase-like
           family, member 4 isoform 2 - Macaca mulatta
          Length = 970

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 249 TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 380
           T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 757 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 800


>UniRef50_Q14679 Cluster: Tubulin--tyrosine ligase-like protein 4;
            n=26; Eumetazoa|Rep: Tubulin--tyrosine ligase-like
            protein 4 - Homo sapiens (Human)
          Length = 1199

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 249  TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 380
            T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 986  TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1029


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,909,406
Number of Sequences: 1657284
Number of extensions: 9543704
Number of successful extensions: 22135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22133
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)