Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M17
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.8  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.8  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 240 IITTMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLL 365
           IIT M+ +Q  +W A        E ++  E ++  +DD D L
Sbjct: 122 IITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDAL 163


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 IITTMSASQKESWAAAIDLLTNDECR 317
           ++ + S++   + AAA+D  T+  CR
Sbjct: 27  MVPSFSSTASSALAAAVDAATDKSCR 52


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 IITTMSASQKESWAAAIDLLTNDECR 317
           ++ + S++   + AAA+D  T+  CR
Sbjct: 86  MVPSFSSTASSALAAAVDAATDKSCR 111


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 IITTMSASQKESWAAAIDLLTNDECR 317
           ++ + S++   + AAA+D  T+  CR
Sbjct: 27  MVPSFSSTASSALAAAVDAATDKSCR 52


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 240 IITTMSASQKESWAAAIDLLTNDECR 317
           ++ + S++   + AAA+D  T+  CR
Sbjct: 86  MVPSFSSTASSALAAAVDAATDKSCR 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,526
Number of Sequences: 336
Number of extensions: 2421
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)