Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M17
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       31   0.77 
05_06_0034 + 25082875-25084113                                         31   1.0  
04_03_0102 + 11275656-11275866,11276648-11276811,11276832-112769...    29   4.1  
08_02_1096 - 24280910-24281195,24281326-24281711                       28   5.4  
01_03_0163 + 13346586-13347809                                         28   7.2  
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404           27   9.5  
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900...    27   9.5  
03_05_0310 + 23008915-23009841,23010401-23011162                       27   9.5  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 470 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 375
           V+E G  + QL+R WR + RG++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>05_06_0034 + 25082875-25084113
          Length = 412

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 230 RMRIKVPEGLMSSDVGVL*RWTNLSCEGRHFGKHFYSCAVXG-SSAG 93
           R+RI++P G +S + GVL +W         FG    SC + G SSAG
Sbjct: 188 RLRIELPAGELSMEEGVLLKWK------ADFGSTLGSCVILGASSAG 228


>04_03_0102 +
           11275656-11275866,11276648-11276811,11276832-11276999,
           11277361-11277414
          Length = 198

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 DKLVHLHKTPTSLDINPSGTFIRIRGTKSLQQ 252
           D+++H + TPT     P G   RI+G ++  Q
Sbjct: 93  DEVLHKYTTPTDTPSTPKGELFRIQGVRTPPQ 124


>08_02_1096 - 24280910-24281195,24281326-24281711
          Length = 223

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 47  LPTHDWVSSYLTRFAHQRCCXSPHNYKNACQNGAP 151
           LP  D V+S    + H+R   SP   +  C++GAP
Sbjct: 45  LPARDAVASMALSWHHRRLITSPDFVRLHCRHGAP 79


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 273 SWAAAIDLLTNDECRLLLEVED 338
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 86  FAHQRCCXSPHNYKNACQNGAPHRTS*SIFTKHQHH*TSIPLALLFAF-VELNHYNNECE 262
           F ++     P   K   + GA  R    +  KH +H   I LA + A  VE+NH  +E  
Sbjct: 242 FYNKHVIKVPKMDKEVNERGASTRRRHKVTNKHYYH-VEIYLAAIDAILVEMNHRFSEVS 300

Query: 263 SE 268
           SE
Sbjct: 301 SE 302


>07_03_0163 +
           14588041-14588266,14588835-14589001,14589880-14590068,
           14590193-14590315,14590531-14590793,14590882-14590976,
           14591529-14591965,14592461-14592481
          Length = 506

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 113 PHNYKNACQNGAPHRTS*SIFTKHQHH*TSIPLALLFAF-VELNHYNNECESE 268
           P   K   + G   R   ++  KH +H   I LA + A  VE+NH+ +E  SE
Sbjct: 415 PKMDKEVNERGTSTRRRHNVTNKHYYH-VEIYLAAIDAILVEMNHHFSEVSSE 466


>03_05_0310 + 23008915-23009841,23010401-23011162
          Length = 562

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 157 DKLVHLHKTPTSLDINPSGTFIRIRGTKS 243
           D+++H + TPT+    P G   RI+G ++
Sbjct: 412 DEVLHKYTTPTATPSTPKGERFRIQGVRT 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,856
Number of Sequences: 37544
Number of extensions: 265340
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)