Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M17
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 29 4.2
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 29 4.2
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 29 4.2
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 28 5.6
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5) 28 7.4
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8) 28 7.4
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 27 9.7
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 27 9.7
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 27 9.7
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2) 27 9.7
>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 153 TGQVSPSSQNTNITRHQSLWHFYSH 227
TG +PS +TNI RH WH Y+H
Sbjct: 61 TGTATPSVNSTNIIRHY-YWHRYAH 84
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 73 LSNSLCTPALLPFTAQL*KCLPKWRPSQDKLVHLHKTPTSLDIN 204
L+ TP L+PF +PK P +L+H P L +N
Sbjct: 459 LAGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVN 502
>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 73 LSNSLCTPALLPFTAQL*KCLPKWRPSQDKLVHLHKTPTSLDIN 204
L+ TP L+PF +PK P +L+H P L +N
Sbjct: 42 LAGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVN 85
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 73 LSNSLCTPALLPFTAQL*KCLPKWRPSQDKLVHLHKTPTSLDIN 204
L+ TP L+PF +PK P +L+H P L +N
Sbjct: 257 LAGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVN 300
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 73 LSNSLCTPALLPFTAQL*KCLPKWRPSQDKLVHLHKTPTSLDIN 204
L+ TP L+PF +PK P +L+H P L +N
Sbjct: 438 LAGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVN 481
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/83 (19%), Positives = 31/83 (37%)
Frame = +2
Query: 53 THDWVSSYLTRFAHQRCCXSPHNYKNACQNGAPHRTS*SIFTKHQHH*TSIPLALLFAFV 232
TH + Y ++ HQ H Y + C + H+ +T H + P +
Sbjct: 140 THQYTHQYTHQYTHQYTHQYTHQYTHQCTHPYTHQ-----YTHPYTHPYTHPYTHQYTHQ 194
Query: 233 ELNHYNNECESEGVMGCGHRFAH 301
+ Y ++C + H++ H
Sbjct: 195 YPHQYTHQCTHQYTHQYTHQYTH 217
>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
Length = 218
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 153 TGQVSPSSQNTNITRHQSLWHFYS 224
TG +PS +TNI RH WH Y+
Sbjct: 61 TGTATPSVNSTNIIRHY-YWHRYA 83
>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
Length = 252
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 153 TGQVSPSSQNTNITRHQSLWHFYS 224
TG +PS +TNI RH WH Y+
Sbjct: 26 TGTATPSVNSTNIIRHY-YWHRYA 48
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 153 TGQVSPSSQNTNITRHQSLWHFYS 224
TG +PS +TNI RH WH Y+
Sbjct: 78 TGTATPSVNSTNIIRHY-YWHRYA 100
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 150 LTGQVSPSSQNTNITRHQSLWHFYSHSWN*IITTMSA 260
LT +V S NIT+H S+W W+ ++ ++ A
Sbjct: 1528 LTHRVPGCSSLENITKHNSIWMGADADWSSLMISLGA 1564
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 132 LAKMAPLTGQVSPSSQNTNITRHQSLWHFYSHSWN 236
+A +AP++ PS + I ++++ W Y +W+
Sbjct: 1 MAMLAPVSQPQPPSGKRKEIYKYEAPWTIYGMNWS 35
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 132 LAKMAPLTGQVSPSSQNTNITRHQSLWHFYSHSWN 236
+A +AP++ PS + I ++++ W Y +W+
Sbjct: 1 MAMLAPVSQPQPPSGKRKEIYKYEAPWTIYGMNWS 35
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 8 LNTTYFLF--FXCNFLPTHDWVSSYLTRFAHQRCCXSPHNYKNAC 136
L T+ +F F C +P + YL R AH R H+++ AC
Sbjct: 1668 LYRTFVIFEPFICRIVPFLCRIVPYLCRIAHCRIIPIVHSFQVAC 1712
>SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2)
Length = 388
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 361 CLKTFRALQRRSKSITPRVSTRHHRRS*NQVPPNSLTIFCSS*TVNANKRIFSPT--GXR 534
C T R ++ +++I P STR R S + P+S I SS T+ + R P+ R
Sbjct: 92 CSSTGRIIRPSTRAIRP--STRAIRPSSRAIRPSSRAIRPSSRTIRPSNRAIRPSSRAIR 149
Query: 535 KKLTSLRSSKTFLKFLXACXXTTPRAAVLASSPF 636
++R S ++ + RA +S F
Sbjct: 150 PSSRTIRPSSCAIRHSDRTIRASSRAIQPSSRIF 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,062
Number of Sequences: 59808
Number of extensions: 308602
Number of successful extensions: 736
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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