Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M17
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   4.9  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    25   5.4  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    25   5.4  
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    28   6.5  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    28   6.5  
AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical...    27   8.6  

>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 468 NDLLQQLDSQCKQENIFSNWLXEKVDLPS 554
           N  +Q++D+ C  +NI    +  K+D+P+
Sbjct: 103 NHWMQEVDTYCTNDNIIKMMVANKIDMPN 131


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 24.6 bits (51), Expect(2) = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 322 CSKLRISSMMIVICLKTFRALQRRSKSITPR 414
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 559 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 589



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 295 CSLTMSAVCCSKLRI 339
           CS+  SA+C SKL I
Sbjct: 510 CSVMSSAICGSKLDI 524


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 322 CSKLRISSMMIVICLKTFRALQRRSKSITPR 414
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 558 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 588



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 295 CSLTMSAVCCSKLRI 339
           CS+  SA+C SKL I
Sbjct: 509 CSVMSSAICGSKLDI 523


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 186 NITRHQSLWHFYSHSWN*I--ITTMSASQKESWAAAIDLLTNDECRLLLEVED 338
           ++ RH  LW    +SWN +  +T M A  K+     + LL N   R LL + D
Sbjct: 253 DVGRHIWLWEDIENSWNRVFLLTQMDAIAKK--RDVVKLLQNKWIRALLSIMD 303


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 337 ISSMMIVICLK-TFRALQRRSKSITPRVSTRHHRRS*NQ 450
           +SS++ VIC    F  ++   KSITP ++  H +R   Q
Sbjct: 186 LSSIVPVICYSWIFYTIRSAHKSITPNMAPEHQKRQGRQ 224


>AF000265-10|AAB52949.2|  335|Caenorhabditis elegans Hypothetical
           protein C18E3.1 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +1

Query: 430 HRRS*NQVPPNSLTIFCSS*TVNANKRIFSPTGXRKKLTSLRSSKTFLKFLXACXXTTPR 609
           HR      PPN + I      V ANK+    TG    L SL +    +++L A    TP+
Sbjct: 97  HRVRQGTAPPNVIPIQKVE-NVEANKKF---TGHSALLVSLNTPTYCVRYLAANAVHTPK 152

Query: 610 AAVLASSP 633
             ++ +SP
Sbjct: 153 NVLIFASP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,463
Number of Sequences: 27780
Number of extensions: 234820
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)