Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M17
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46170.1 68418.m05679 F-box family protein contains F-box dom...    28   6.0  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    28   6.0  

>At5g46170.1 68418.m05679 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 395

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 242 DLVPRMRIKVPEGLMSSDVGVL*RWTNLSCEGRHFGKHFYSCAVXGSSA 96
           D +  +RI++P G +  D GVL +W         FG    +C + G+S+
Sbjct: 168 DEIRYLRIELPSGELGIDDGVLLKWR------AEFGSTLDNCVILGASS 210


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 160 KLVHLHKTPTSLDINPSGTFIRIRGTKSLQQ*VRVRRSHGLR 285
           K+ +LHK      +NP+  ++ IRG K++   VR + S G++
Sbjct: 251 KIRNLHKLLGGT-LNPNAAYLLIRGMKTMHLRVRQQNSTGMK 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,633
Number of Sequences: 28952
Number of extensions: 212044
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)