BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_M14 (378 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 46 3e-06 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 44 8e-06 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 6e-05 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 40 1e-04 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 2e-04 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 4e-04 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 7e-04 SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 7e-04 SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 7e-04 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 37 0.001 SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.002 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.002 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.003 SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.004 SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.006 SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.011 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.011 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.020 SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.020 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.020 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.026 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 32 0.034 SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.079 SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.10 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.18 SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.18 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 0.56 SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 0.74 SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 1.7 SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 3.9 SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 5.2 SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 24 9.1 SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 24 9.1 >SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 45.6 bits (103), Expect = 3e-06 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Frame = +1 Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAED 297 D K+Y+ NL N + ++ ++ +G++ + + +N GF F EF++P DAE Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366 Query: 298 SVRGLDG 318 ++ GLDG Sbjct: 367 AISGLDG 373 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 44.0 bits (99), Expect = 8e-06 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 312 VYVGNL ++ +I +FSK G IR + + + P GF FVE+ + +DA DS++ + Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93 Query: 313 DGT 321 T Sbjct: 94 SRT 96 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 41.1 bits (92), Expect = 6e-05 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = +1 Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303 SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP A +V Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63 Query: 304 RGLD 315 R L+ Sbjct: 64 RNLN 67 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 39.9 bits (89), Expect = 1e-04 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +1 Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 324 +++VG + A++ ++ F YG I + + GF FVE ED RDA D V G Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQGKE 61 Query: 325 CCGT 336 G+ Sbjct: 62 FMGS 65 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 39.1 bits (87), Expect = 2e-04 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315 +YVGNL S + +F+ G++ +A P G F V+FE+ DA S+ L+ Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341 Query: 316 GTRCCG 333 G R G Sbjct: 342 GYRYGG 347 Score = 34.3 bits (75), Expect = 0.006 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1 Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGF----AFVEFEDPRDAEDSVRGL 312 +VYVGNL +E+ + + GN+ N + P G A +E+ +A +++ L Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126 Query: 313 DGTRCCG 333 + G Sbjct: 127 SNQKFMG 133 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 38.3 bits (85), Expect = 4e-04 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Frame = +1 Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---------PPGFAFVEFEDPRDAED 297 +V+VG L T+ K EI +F G +R V + P G AFV F + D + Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 298 SVRGLDG 318 ++ L+G Sbjct: 105 AIETLNG 111 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 37.5 bits (83), Expect = 7e-04 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%) Frame = +1 Query: 142 CKVYVGNLGTN--ASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDS 300 C ++V NL N + ++ ++FSK+G I++ +A P G+ FV F P +A + Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQA 478 Query: 301 VRGLDG 318 + L+G Sbjct: 479 INTLNG 484 Score = 34.3 bits (75), Expect = 0.006 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 10/68 (14%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----------ARNPPGFAFVEFEDPRDAED 297 +YVGNL + ++ ++F +GN + +++P FAF+ FE+ A++ Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81 Query: 298 SVRGLDGT 321 ++ L+G+ Sbjct: 82 AIASLNGS 89 >SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 661 Score = 37.5 bits (83), Expect = 7e-04 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFE 276 +YV NL S I +FS YGN++++W+ +P A V +E Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43 >SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 116 Score = 37.5 bits (83), Expect = 7e-04 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315 V+VGNL + ++ + F +G I +V + R +AFVEF++P DA++++ ++ Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67 Query: 316 GTRCC 330 + C Sbjct: 68 YSILC 72 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 36.7 bits (81), Expect = 0.001 Identities = 21/58 (36%), Positives = 33/58 (56%) Frame = +1 Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312 S V++GNL ++ + EI + F K+G I ++ + + AFV F + RDA VR L Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354 >SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 36.3 bits (80), Expect = 0.002 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = +1 Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 297 +L ++V + + + E+ +IFSK+G + +V + R P GF F+ F +A Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157 Query: 298 SVRGLDGTRCCGTXNSCRNVKLGPP 372 ++ L+ G + + K P Sbjct: 158 AIDNLNSQEFYGRVLNVQKAKRSRP 182 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 35.9 bits (79), Expect = 0.002 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +1 Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVW 234 D S +YVGN+ + S EI K FSKYG + +++ Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 35.5 bits (78), Expect = 0.003 Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 5/62 (8%) Frame = +1 Query: 115 SRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFED 279 S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81 Query: 280 PR 285 R Sbjct: 82 QR 83 >SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 219 Score = 35.1 bits (77), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +1 Query: 127 EWDLS-CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFED 279 EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79 >SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 34.3 bits (75), Expect = 0.006 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 282 VYVGN+ + + E+ F+ G++ V + +P GFA++EF +P Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 33.5 bits (73), Expect = 0.011 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFED 279 V+VGNL A + + + F G+I V + R+P GFA+++F+D Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 33.5 bits (73), Expect = 0.011 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +1 Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309 ++++ NL + ++ ++ +F +G + V + NP GFA+++F D DA + Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383 Query: 310 LD 315 LD Sbjct: 384 LD 385 Score = 27.5 bits (58), Expect = 0.74 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKY-GNIRNVWVARNPP---------GFAFVEFEDPRDAED 297 +YV NL + + E K+F G + V A+ P GF FVEF+D A Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680 Query: 298 SVRGLDG 318 ++ ++G Sbjct: 681 AMHAMNG 687 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 32.7 bits (71), Expect = 0.020 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +1 Query: 202 FSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLDGTRCCG 333 FSK+G +R + + G FAFV +D + AE+++ L+GT G Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDG 175 >SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 32.7 bits (71), Expect = 0.020 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +1 Query: 148 VYVGNLG-TNASKYEIXKIFSKYGNIRNVWVAR--NPPGFAFVEFEDPRDAEDSVRG 309 ++VG L N + Y + +FSKYG + + + P FAF+ F+ + A +V G Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCG 423 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 32.7 bits (71), Expect = 0.020 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303 +C V+VG L N + + F +YG I V + G+ +V+FE P A+ +V Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 304 RGLDGTR 324 +GT+ Sbjct: 322 -AANGTK 327 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 32.3 bits (70), Expect = 0.026 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +1 Query: 256 FAFVEFEDPRDAEDSVRGLDGTR 324 FAFVE+ED RDAED+ + G R Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRR 71 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 31.9 bits (69), Expect = 0.034 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFS-KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318 +YVGNL + S+ E+ +FS + G R + + FVEFE+ A ++++ L G Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485 >SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 233 Score = 30.7 bits (66), Expect = 0.079 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Frame = +1 Query: 100 LKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAF 264 LK+K + + D ++VGNL ++S + F + G + +V + + G+AF Sbjct: 78 LKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAF 137 Query: 265 VEFEDPR 285 VEF +P+ Sbjct: 138 VEFINPK 144 >SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1060 Score = 30.3 bits (65), Expect = 0.10 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 324 ++VGNL + S + FS YG + ++ + + AF+ F+ A+ + L+G R Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKR 646 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 29.5 bits (63), Expect = 0.18 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 208 KYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312 KYG + ++ V N G FV+FE+ AE ++ GL Sbjct: 540 KYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574 >SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 29.5 bits (63), Expect = 0.18 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = +1 Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR--NPPG----FAFVEFEDPRD 288 +L ++YVG L ++ ++ FS++G++ N+ + P G FA++ F D Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 27.9 bits (59), Expect = 0.56 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +1 Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR---NPPGFAFVEFEDPRDAEDSV 303 ++YV N+ ++ ++ F YG + +V + + GF +V +DAE+++ Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL 813 Score = 27.1 bits (57), Expect = 0.98 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVR 306 +YV N + +I K+FS YGN+ +V F +V+ P +A ++++ Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ 724 >SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 122 Score = 27.5 bits (58), Expect = 0.74 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +2 Query: 104 KLRCLATENGIFLAKCT---WATWVLMRLNMKXKKYF 205 KL +AT + IF + W+TWVL R +K +F Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41 >SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1568 Score = 26.2 bits (55), Expect = 1.7 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 76 IIFIHPFQLKTKMSRYREWDLSC 144 ++ H TK+S + EW LSC Sbjct: 179 VLLDHDVSRATKLSYFNEWSLSC 201 >SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccharomyces pombe|chr 3|||Manual Length = 276 Score = 25.0 bits (52), Expect = 3.9 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = +1 Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276 +YVG L + ++ FS++G + + ++RN +AF+EFE Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154 >SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 873 Score = 24.6 bits (51), Expect = 5.2 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = +2 Query: 125 ENGIFLAKCTWATWVLMRLNMK 190 +NGI L +W TW+ + +K Sbjct: 326 DNGIRLENASWRTWMKHKFKLK 347 >SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 731 Score = 23.8 bits (49), Expect = 9.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 138 KIPFSVARHLSFELKRVDKNYSQ 70 K P SV+R+ FE K NYS+ Sbjct: 601 KFPNSVSRNTHFESKSPHPNYSR 623 >SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 23.8 bits (49), Expect = 9.1 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 279 VFEFYKCKSGRISSYPYVTYV 217 V FY K GRIS +TYV Sbjct: 96 VIAFYSFKDGRISLIDELTYV 116 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,562,460 Number of Sequences: 5004 Number of extensions: 27903 Number of successful extensions: 116 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 122233080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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