Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M14
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 95 1e-20
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 95 1e-20
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 95 1e-20
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 64 2e-11
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 64 2e-11
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 56 6e-09
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 56 6e-09
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 56 6e-09
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 56 1e-08
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 52 1e-07
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 52 2e-07
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 52 2e-07
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 52 2e-07
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 48 2e-06
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 48 2e-06
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 48 2e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 48 2e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 47 4e-06
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 45 2e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 42 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 41 3e-04
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 41 3e-04
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 41 3e-04
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 41 3e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 39 0.001
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 39 0.001
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.003
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 37 0.006
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 37 0.006
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.007
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.007
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.007
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.010
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 36 0.010
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 36 0.010
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 36 0.010
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 36 0.010
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 36 0.010
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.013
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 34 0.029
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 34 0.029
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.039
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.051
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.051
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.051
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 33 0.051
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.068
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.068
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.068
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.068
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.068
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 32 0.12
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.16
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 32 0.16
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 32 0.16
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 32 0.16
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 32 0.16
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.16
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.21
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.21
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.21
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.21
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 31 0.21
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 31 0.21
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 31 0.21
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.21
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.27
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.63
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 0.63
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 0.83
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 0.83
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 0.83
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 1.1
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 29 1.1
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 1.1
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 1.1
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 1.5
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 1.9
AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical ... 28 1.9
AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical ... 28 1.9
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 1.9
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 28 2.5
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 28 2.5
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 2.5
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 27 4.5
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 27 4.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 27 4.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 27 4.5
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 5.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 5.9
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 26 7.8
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 26 7.8
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 26 7.8
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 26 7.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 95.5 bits (227), Expect = 1e-20
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+ KVYVG L ++A+ E+ +IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 316 GTRCCG 333
G+R CG
Sbjct: 61 GSRICG 66
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 95.5 bits (227), Expect = 1e-20
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+ KVYVG L ++A+ E+ +IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 316 GTRCCG 333
G+R CG
Sbjct: 61 GSRICG 66
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 95.5 bits (227), Expect = 1e-20
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+ KVYVG L ++A+ E+ +IF ++G IR VWVAR PPGFAFVE++D RDAED+VR LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 316 GTRCCG 333
G+R CG
Sbjct: 61 GSRICG 66
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
KVYVGNL + + E+ IF KYG I+ V + + P FAFVEFED RDAED+VR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
KVYVGNL + + E+ IF KYG I+ V + + P FAFVEFED RDAED+VR DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 56.4 bits (130), Expect = 6e-09
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++Y+G L + S+ +I F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 316 GTRCCG 333
G G
Sbjct: 58 GKELGG 63
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 56.4 bits (130), Expect = 6e-09
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++Y+G L + S+ +I F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 316 GTRCCG 333
G G
Sbjct: 58 GKELGG 63
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 56.4 bits (130), Expect = 6e-09
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++Y+G L + S+ +I F YG IR+V + +N GF FVEF+D RDAED+V L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLN 57
Query: 316 GTRCCG 333
G G
Sbjct: 58 GKELGG 63
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 324
+VY+G L AS ++ F YG + +V + +N GF FV+F+D RDA+D+V L+G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNGKE 59
Query: 325 CCG 333
CG
Sbjct: 60 LCG 62
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 52.0 bits (119), Expect = 1e-07
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 11/73 (15%)
Frame = +1
Query: 145 KVYVGNLGTNASKYE-----------IXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
+VYVGN+ +A++ E I +FS G I+++W+A+ PPGFAFV F+ A
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHA 77
Query: 292 EDSVRGLDGTRCC 330
D+V+ L+G + C
Sbjct: 78 FDAVKYLNGKKIC 90
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
++Y+G + NA + ++ + YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDG 57
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
++Y+G + NA + ++ + YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDG 57
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
++Y+G + NA + ++ + YG I N+ + GFAFV+FED RDAED+ LDG
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDG 57
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 48.4 bits (110), Expect = 2e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCK----VYVGNLGTNASKYEIXKIFSKYGNIRN---VWV 237
+F+ FQ + + R RE + K VYV N G + +K + K+F+K+GNI + + V
Sbjct: 190 VFVGKFQPRAQ--RNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTV 247
Query: 238 ARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
GF FV F +P +AE +V+ L + GT
Sbjct: 248 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGT 280
Score = 34.7 bits (76), Expect = 0.022
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 316 GTRCC 330
C
Sbjct: 379 SKMVC 383
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 316 GTRCCG 333
G G
Sbjct: 182 GMLLAG 187
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 48.0 bits (109), Expect = 2e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCK----VYVGNLGTNASKYEIXKIFSKYGNIRN---VWV 237
+F+ FQ + + R RE + K VYV N G + +K + K+F+K+GNI + + V
Sbjct: 130 VFVGKFQPRAQ--RNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV 187
Query: 238 ARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
GF FV F +P +AE +V+ L + GT
Sbjct: 188 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGT 220
Score = 34.7 bits (76), Expect = 0.022
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 318
Query: 316 GTRCC 330
C
Sbjct: 319 SKMVC 323
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 48.0 bits (109), Expect = 2e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCK----VYVGNLGTNASKYEIXKIFSKYGNIRN---VWV 237
+F+ FQ + + R RE + K VYV N G + +K + K+F+K+GNI + + V
Sbjct: 127 VFVGKFQPRAQ--RNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV 184
Query: 238 ARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
GF FV F +P +AE +V+ L + GT
Sbjct: 185 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGT 217
Score = 34.7 bits (76), Expect = 0.022
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 315
Query: 316 GTRCC 330
C
Sbjct: 316 SKMVC 320
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 316 GTRCCG 333
G G
Sbjct: 119 GMLLAG 124
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 48.0 bits (109), Expect = 2e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCK----VYVGNLGTNASKYEIXKIFSKYGNIRN---VWV 237
+F+ FQ + + R RE + K VYV N G + +K + K+F+K+GNI + + V
Sbjct: 190 VFVGKFQPRAQ--RNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV 247
Query: 238 ARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
GF FV F +P +AE +V+ L + GT
Sbjct: 248 EGKSKGFGFVAFANPEEAETAVQALHDSTIEGT 280
Score = 34.7 bits (76), Expect = 0.022
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + K F YGNI + V + GF FV FE P +A +V ++
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 316 GTRCC 330
C
Sbjct: 379 SKMVC 383
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+++ NL I FS +GNI + VA + GF+ FV FE A+++++ ++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 316 GTRCCG 333
G G
Sbjct: 182 GMLLAG 187
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
+YVG+L + ++ + + FS G + ++ V R+ G+A+V F+ P DAE
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE 87
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 47.2 bits (107), Expect = 4e-06
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
V+VGN+ + S+ I IFSK GN+ ++ + + P G+ F+EF D + AE ++R L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 313 DGTRCCG 333
+G G
Sbjct: 80 NGYELSG 86
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 303
SC +YVGNL + ++ ++F + G++R V + + P GF FVE+ DAE ++
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 304 RGLDGTR 324
+ + TR
Sbjct: 96 QNISNTR 102
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
VYVGN+ ++ EI F+ G++ NV + + P GFAFVEF + A+ +V L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 313 DG 318
+G
Sbjct: 68 NG 69
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
VYVGN ++ E+ FS G I NV + + P GFAF+EF + A+ +V +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 313 DGTRCCG 333
+G G
Sbjct: 67 NGAEFNG 73
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
C+++VGNL + E+ ++FS +G+I +++ GFAF+ + AE + +DG
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAIDG 172
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
C+++VGNL + E+ ++FS +G+I +++ GFAF+ + AE + +DG
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAIDG 172
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN------PPGFAFVEFEDPRDAEDSVR 306
+V + NL N K + +IFS YG I+NV + + G+ +VE+++ DAE S++
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 307 GLDGTRCCG 333
+DG + G
Sbjct: 194 HMDGGQIDG 202
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 312
VYVGN ++ ++ FS+ GN+ NV + P GFAFVEF + A+ +V
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 313 DG 318
+G
Sbjct: 66 NG 67
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
VYVGN+ + ++ +FS YG+I V + + +AFV +E A ++ ++G
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYEKKECATKAIMEMNGKEM 297
Query: 328 CGTXNSC 348
G C
Sbjct: 298 AGNQVRC 304
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
V+VG+L + S + F+K+G + V R+ G+ FV F + ++AE+++ G+
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 313 DG 318
+G
Sbjct: 197 NG 198
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEF 273
++ R R + +C+V NL ++ E+ +F K G + +++AR+ P GFAFV F
Sbjct: 167 QIDRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 274 EDPRDAEDSVRGLDGTR 324
E DA ++ L+ R
Sbjct: 225 ESRDDAARAIAELNDIR 241
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 127 EWDLS-CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRD 288
EWD + +V+ G+LG S + K F KY + + V R G+ FV F D D
Sbjct: 197 EWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSED 256
Query: 289 AEDSVRGLDG 318
++R +DG
Sbjct: 257 YVRAMREMDG 266
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEF 273
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+ GFAF+ +
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
Query: 274 EDPRDAEDSVRGLDG 318
+D R +V +G
Sbjct: 87 KDQRSTILAVDNFNG 101
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+ NL + ++ + F +YG+I +V + +R GF FV F + RDAE ++ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+ NL + ++ + F +YG+I +V + +R GF FV F + RDAE ++ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.007
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 79 IFIHPFQLKT-KMSRYREWDLS-CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-- 246
+++ FQ + +M E L V+V N G + + ++ +FSK+G I + V +
Sbjct: 215 VYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ 274
Query: 247 --PPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
P GF FV F D A +V L+ + GT
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
+Y+G+L + S+ + + FS G + ++ V R+ G+A+V F+ P DAE
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAE 112
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.007
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 79 IFIHPFQLKT-KMSRYREWDLS-CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-- 246
+++ FQ + +M E L V+V N G + + ++ +FSK+G I + V +
Sbjct: 215 VYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ 274
Query: 247 --PPGFAFVEFEDPRDAEDSVRGLDGTRCCGT 336
P GF FV F D A +V L+ + GT
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
+Y+G+L + S+ + + FS G + ++ V R+ G+A+V F+ P DAE
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAE 112
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGLD 315
++VG + S+ ++ + F YG I+ + + A P G+AF+E+ D + + + D
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 316 GTRCCG 333
G + G
Sbjct: 166 GIKVDG 171
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 35.9 bits (79), Expect = 0.010
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 115 SRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFED 279
S + S +Y+ L N + + ++ SKYGNI + N G+ FV+FE
Sbjct: 98 SNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 157
Query: 280 PRDAEDSVRGLD 315
P+ A +V GL+
Sbjct: 158 PQAAAAAVDGLN 169
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.010
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 300
D + K+++G L ++ ++ ++ +G ++ NV N G+AF E+ DP + +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 347
Query: 301 VRGLDG 318
+ GL+G
Sbjct: 348 IAGLNG 353
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 35.9 bits (79), Expect = 0.010
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP--GFAFVEFEDPRDAEDSVRGLDG 318
+Y+ NL + E+ +IF K+G +R + V G AFV +ED DA+ + L G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.010
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 300
D + K+++G L ++ ++ ++ +G ++ NV N G+AF E+ DP + +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 347
Query: 301 VRGLDG 318
+ GL+G
Sbjct: 348 IAGLNG 353
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 35.9 bits (79), Expect = 0.010
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 300
D + K+++G L ++ ++ ++ +G ++ NV N G+AF E+ DP + +
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 322
Query: 301 VRGLDG 318
+ GL+G
Sbjct: 323 IAGLNG 328
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 35.9 bits (79), Expect = 0.010
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRDAEDS 300
D + K+++G L ++ ++ ++ +G ++ NV N G+AF E+ DP + +
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQA 325
Query: 301 VRGLDG 318
+ GL+G
Sbjct: 326 IAGLNG 331
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 35.5 bits (78), Expect = 0.013
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
S +Y+ L N + + ++ SKYGNI + N G+ FV+FE P+ A +V
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 139
Query: 304 RGLD 315
GL+
Sbjct: 140 DGLN 143
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 34.3 bits (75), Expect = 0.029
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGL 312
KV+V N+ A+ E+ +FSK+G + +V + P G AFV+F+ A+ V
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVASG 743
Query: 313 D 315
D
Sbjct: 744 D 744
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 34.3 bits (75), Expect = 0.029
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNA-SKYEIXKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRG 309
+ +V++GN+ ++ +I ++F +G I V + A+ GF FV+F + A++S R
Sbjct: 81 IRARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ--GFGFVQFNEAGSADESCRS 138
Query: 310 LDG---TRCC 330
L+G CC
Sbjct: 139 LNGMSWKACC 148
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.039
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 315
++V NL ++ + ++FS++G I NV + R+ G+AFV + +A +++ L+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 316 GTRCCG 333
GT G
Sbjct: 436 GTNLAG 441
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.5 bits (73), Expect = 0.051
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 312
VYVGN+ A+ EI + F G++ V + + +P GFA+VEF + ++++
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 313 D 315
D
Sbjct: 140 D 140
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.5 bits (73), Expect = 0.051
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 312
V+V N+ A++ ++ FS+YG I+N+ + + G+A VE+E ++A +++
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 313 DGTRCCG 333
+ T G
Sbjct: 117 NDTDLLG 123
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 33.5 bits (73), Expect = 0.051
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
++ N+ +I IFS++ +R V N FAF+E+E +E + + LD R
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRI 204
Query: 328 CGT 336
T
Sbjct: 205 TPT 207
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 33.5 bits (73), Expect = 0.051
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFV 267
C+++VGNL + E+ ++FS +G+I +++ GFAF+
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFL 155
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.068
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 315
+++V N+ ++ +F K+G + +V + R GF FV E P+DAE + + L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 316 GT 321
G+
Sbjct: 214 GS 215
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.068
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 315
+++V N+ ++ +F K+G + +V + R GF FV E P+DAE + + L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 316 GT 321
G+
Sbjct: 214 GS 215
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
++YV + + ++ + + F+KYG + + + P GF FV F+D + V
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
++YV + + ++ + + F+KYG + + + P GF FV F+D + V
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.1 bits (72), Expect = 0.068
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
K++VG L +N + + + +S++G I ++ V R+P GF FV F + + +++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
++YV + + ++ + + F+KYG + + + P GF FV F+D + V
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 97 QLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKY-GNIRNVWVARNPPGFAFVEF 273
+L ++ + DL ++++ N+ T + K+ K G++++ V R+ +A+V F
Sbjct: 13 ELTPEVKEEKAIDLD-RIHIKNIPTFIGFKQFKKVLEKILGDVKSKKV-RHMSDYAYVTF 70
Query: 274 EDPRDAEDSVRGLDG 318
E P DA+ ++ +DG
Sbjct: 71 ETPEDAQKAINLVDG 85
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G L + + F ++G + V R+P GF F+ F DP +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVD 100
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAE 294
KV++G L ++ ++ + F YG + + + + GF FV F+ A+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVAD 189
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSV 303
+VY+G AS + F YG + + + +N G +F+D DA+D +
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADDII 54
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 309
+VYV ++ + S+ ++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 310 LD 315
++
Sbjct: 268 MN 269
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 309
+VYV ++ + S+ ++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 310 LD 315
++
Sbjct: 268 MN 269
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 309
+VYV ++ + S+ ++ +F +G I +AR P GF ++EF + +++ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 310 LD 315
++
Sbjct: 268 MN 269
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G L + + F ++G + V R+P GF F+ F DP +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVD 100
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAE 294
KV++G L ++ ++ + F YG + + + + GF FV F+ A+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVAD 189
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.21
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNI---RNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+YVGNL + ++ I +F++ G++ + ++ N P +AFVEF D A +++ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMN 105
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG 255
HP Q+K + R K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 127 HPVQMKPADTENRN---ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 31.1 bits (67), Expect = 0.27
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFE 276
++ NL +A+ + +F+++ ++++ + N PG AFVEF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 0.63
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 309
++++ NL + ++ +F KYG + V V + GFA VEF P A +
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 310 LDG 318
LDG
Sbjct: 340 LDG 342
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 0.63
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +1
Query: 94 FQLKTKMSR--YREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPP 252
F L+++MS E + +YVG L S+ + ++ + G + +V V N
Sbjct: 5 FFLRSEMSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQ 64
Query: 253 GFAFVEFEDPRDAEDSVRGLDGTRCCG 333
GF FVEF DA+ +++ L+ + G
Sbjct: 65 GFGFVEFMGEEDADYAIKILNMIKLYG 91
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 315
+++V N+ + ++ +F K G + +V + R GF FV ++P DA+ + +
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 316 GT 321
GT
Sbjct: 161 GT 162
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.5 bits (63), Expect = 0.83
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNPPGFAFVEFEDPRDAEDSVRGLD 315
+++V N+ + ++ +F K G + +V + R GF FV ++P DA+ + +
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 316 GT 321
GT
Sbjct: 161 GT 162
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.5 bits (63), Expect = 0.83
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Frame = +1
Query: 85 IHPFQLKTKMSRYREWDLSC----------KVYVGNLGTNASKYEIXKIFSKYGNIRNVW 234
IHP++L + ++++ + K+++G L + + ++ FS++G + +
Sbjct: 41 IHPYELHQMLRQFQQMGMGQYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAI 100
Query: 235 VARNP-----PGFAFVEFEDPRDAEDSV 303
V R+P GF FV F AE ++
Sbjct: 101 VIRDPNTKHSRGFGFVTFASIFSAESAM 128
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 312
+YVG L S+ + ++ + G + +V V N GF FVEF DA+ +++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 313 DGTRCCG 333
+ + G
Sbjct: 75 NMIKLYG 81
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN 246
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSV 303
K+++G L + + ++ FS++G + + V R+P GF FV F AE ++
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSV 303
K+++G L + + ++ FS++G + + V R+P GF FV F AE ++
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
V+VG+L + ++ + F K+G + + R+ G+ FV + DAE ++ +
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 313 DG 318
+G
Sbjct: 194 NG 195
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNP 249
IF P +K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 31 IFTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
Query: 250 PGFAFVEFEDPRDAE 294
GF FV + E
Sbjct: 90 KGFGFVTLDSIESCE 104
>AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical
protein Y71G12B.23a protein.
Length = 594
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 141 RKIPFSVARHLSFELKRVDKNYSQYFTKFNFLLLATTFRL 22
+ + F+ L ++K KNYS++ K NFL L T +L
Sbjct: 47 KNVGFNAFLKLQVDIKESLKNYSKFGKKSNFLKLLTAKQL 86
>AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical
protein Y71G12B.23b protein.
Length = 537
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 141 RKIPFSVARHLSFELKRVDKNYSQYFTKFNFLLLATTFRL 22
+ + F+ L ++K KNYS++ K NFL L T +L
Sbjct: 47 KNVGFNAFLKLQVDIKESLKNYSKFGKKSNFLKLLTAKQL 86
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA---RNP 249
IF P +K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 31 IFTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
Query: 250 PGFAFVEFEDPRDAE 294
GF FV + E
Sbjct: 90 KGFGFVTLDSIESCE 104
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276
VYVGN+ ++ EI + F+ G + V + ++ FAFVEF+
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEF 273
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEF 273
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 187 EIXKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRGLDG 318
E+ F ++GN+ + VAR N G+A+V F++ AE + ++G
Sbjct: 47 ELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical
protein F46B3.1 protein.
Length = 186
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = -3
Query: 160 CPRT--LCKKDPILCSETS 110
CP T LCKKDP CS+T+
Sbjct: 44 CPYTCGLCKKDPNECSDTN 62
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKY-GNIRNVWVARNPP----GFAFVEF 273
VYVGNL E+ ++F+ Y G + +A P +A+VEF
Sbjct: 165 VYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEF 211
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKY-GNIRNVWVARNPP----GFAFVEF 273
VYVGNL E+ ++F+ Y G + +A P +A+VEF
Sbjct: 165 VYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEF 211
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
++YV + + ++ + + F+KYG + + + P GF FV F+D + V
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 134
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
++YV + + ++ + + F+KYG + + + P GF FV F+D + V
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 134
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 315
V V NL + I IF +G I + + R GFA + F + DA+ S L+
Sbjct: 129 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLN 188
Query: 316 GTRCCG 333
G
Sbjct: 189 NFELAG 194
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 315
V V NL + I IF +G I + + R GFA + F + DA+ S L+
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLN 333
Query: 316 GTRCCG 333
G
Sbjct: 334 NFELAG 339
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 26.2 bits (55), Expect = 7.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 157 GNLGTNASKYEIXKIFSKYGNIRNVWVA-RNPPGFAFVEFEDPRDAEDSVRGLDGTR 324
GN+G + +Y + + SK I+ A NP G E ED +DA +++ G +
Sbjct: 288 GNVGLHTHRY-LHRAGSKVIGIQEYDCAVYNPDGIHPKELEDWKDANGTIKNFPGAK 343
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV 231
V+VGN+ ++ + +IFS +G I +V
Sbjct: 145 VFVGNMPLTMNEKSVRRIFSDFGTISSV 172
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGF---AFVEFEDPRDAEDSVRGL 312
VY G+ GT SK+ K+ + R W A + AFV+F+D AE+S++ L
Sbjct: 33 VYDGHGGTEVSKFTSAKL-PDFLKERKFWEADDVAECLQKAFVDFDDFIRAEESMKEL 89
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGF---AFVEFEDPRDAEDSVRGL 312
VY G+ GT SK+ K+ + R W A + AFV+F+D AE+S++ L
Sbjct: 55 VYDGHGGTEVSKFTSAKL-PDFLKERKFWEADDVAECLQKAFVDFDDFIRAEESMKEL 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,688,777
Number of Sequences: 27780
Number of extensions: 158732
Number of successful extensions: 561
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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