Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M14
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.52 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.52 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   3.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   3.6  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   6.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 245 FRATHTLRMLPYLENIFXISYLDALVPKLPTYTLQERSHS 126
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 245 FRATHTLRMLPYLENIFXISYLDALVPKLPTYTLQERSHS 126
           FR+  T +M P+++ +F       LV + P Y  +   +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 89  TLFNSKLRCLATENGIFLAKCTWATWVLMRLNMKXKKY 202
           ++ NS L+  +       A CT+AT     L +  +KY
Sbjct: 30  SMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKY 67


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 143 AKCTWATWVLMRLNMK 190
           +KCTW      R+N+K
Sbjct: 68  SKCTWTITSYHRINLK 83


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 179 LNMKXKKYFLNTVTYVTYG*LEIRP 253
           ++ K + Y  N +T   YG L IRP
Sbjct: 58  IDYKQRVYDKNGMTGDAYGGLNIRP 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,885
Number of Sequences: 438
Number of extensions: 2048
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)