Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M14
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 79 1e-15
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 75 2e-14
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 72 1e-13
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 72 1e-13
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 65 1e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 64 4e-11
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 64 4e-11
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 64 4e-11
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 62 1e-10
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 62 1e-10
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 60 6e-10
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 58 2e-09
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 58 3e-09
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 53 7e-08
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 50 7e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 50 7e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 50 7e-07
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 49 9e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 48 3e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 47 5e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 1e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 3e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 3e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 3e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 3e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 43 8e-05
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 1e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 42 1e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 42 1e-04
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 42 1e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 1e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 40 4e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 4e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 40 4e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 7e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 7e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 40 7e-04
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 40 7e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 7e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 39 0.001
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.001
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.001
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.001
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.001
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 39 0.001
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.001
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 39 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.002
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.003
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.003
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.004
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.005
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.005
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.007
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.007
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.009
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.009
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.009
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 36 0.009
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.012
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.012
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 36 0.012
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.012
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.012
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.016
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.016
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 35 0.016
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.016
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.016
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.016
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.021
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.021
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.021
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.027
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 34 0.027
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 34 0.027
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 34 0.027
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 34 0.027
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 34 0.036
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 34 0.036
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.036
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.036
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.048
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.048
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 33 0.048
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 33 0.048
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.063
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.063
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.063
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.083
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.083
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.083
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.083
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.083
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.083
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 33 0.083
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 33 0.083
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.11
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.11
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.11
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 32 0.11
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.15
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.15
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.15
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.15
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.15
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 31 0.19
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.19
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.19
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.25
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.25
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 31 0.25
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.25
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.34
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 30 0.44
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 0.44
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 0.44
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 0.44
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 30 0.44
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 30 0.44
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 0.44
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 30 0.44
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 0.44
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 0.44
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 0.44
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.59
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 30 0.59
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 0.59
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 0.59
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 30 0.59
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 30 0.59
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 1.0
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 1.0
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 1.0
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 29 1.0
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 29 1.0
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 1.0
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 1.0
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 1.0
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 1.8
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 1.8
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 1.8
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 28 2.4
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 28 2.4
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 27 3.1
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 27 3.1
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 3.1
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 3.1
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 3.1
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 27 3.1
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 27 3.1
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 3.1
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 27 4.1
At3g16410.1 68416.m02079 jacalin lectin family protein similar t... 27 4.1
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 4.1
At3g16400.1 68416.m02077 jacalin lectin family protein similar t... 27 5.5
At2g33070.1 68415.m04055 jacalin lectin family protein similar t... 27 5.5
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 27 5.5
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 26 7.2
At2g44490.1 68415.m05531 glycosyl hydrolase family 1 protein con... 26 7.2
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 26 9.6
At3g16390.1 68416.m02075 jacalin lectin family protein similar t... 26 9.6
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 26 9.6
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 79.0 bits (186), Expect = 1e-15
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+VYVGNL ++ E+ F +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 74.5 bits (175), Expect = 2e-14
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+VYVGNL ++ E+ F +G IR+VWVAR PPG+AF++FED RDA D++R +DG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+VYVGNL ++ E+ F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+VYVGNL ++ E+ F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 65.3 bits (152), Expect = 1e-11
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+YVGNL + K E+ +F KYG I ++ + PPG+AFVEFEDPRDA+D++ G DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDG 67
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 63.7 bits (148), Expect = 4e-11
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 63.7 bits (148), Expect = 4e-11
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 63.7 bits (148), Expect = 4e-11
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 62.1 bits (144), Expect = 1e-10
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+YVGNL + + E+ +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 62.1 bits (144), Expect = 1e-10
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+YVGNL + + E+ +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 59.7 bits (138), Expect = 6e-10
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 312
S +YVGNL + ++EI IF KYG I ++ V PP + FVEFE RDAED+++G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 313 DG 318
DG
Sbjct: 66 DG 67
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 58.0 bits (134), Expect = 2e-09
Identities = 32/89 (35%), Positives = 52/89 (58%)
Frame = +1
Query: 112 MSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
M RY + + ++YVG L + ++ ++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57
Query: 292 EDSVRGLDGTRCCGTXNSCRNVKLGPPKG 378
+D+ LDG G+ + G P+G
Sbjct: 58 DDARYYLDGRDFDGSRITV-EASRGAPRG 85
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 57.6 bits (133), Expect = 3e-09
Identities = 32/89 (35%), Positives = 52/89 (58%)
Frame = +1
Query: 112 MSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
M RY + + ++YVG L + ++ ++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57
Query: 292 EDSVRGLDGTRCCGTXNSCRNVKLGPPKG 378
+D+ LDG G+ + G P+G
Sbjct: 58 DDARHYLDGRDFDGSRITV-EFSRGAPRG 85
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 52.8 bits (121), Expect = 7e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
VYVGN + ++ ++FSK+G ++ V + G+AFV FED RDAED++R D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 49.6 bits (113), Expect = 7e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALD 56
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 49.6 bits (113), Expect = 7e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALD 56
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 49.6 bits (113), Expect = 7e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
V+VGN + ++ ++F KYG + V + G+AFV FED RDAED++R LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 49.2 bits (112), Expect = 9e-07
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALD 56
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 47.6 bits (108), Expect = 3e-06
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG- 255
IF+ PF K + + VYV NL + E+ F +YG+I + V R+ G
Sbjct: 204 IFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK 263
Query: 256 ---FAFVEFEDPRDAEDSVRGLDGTR 324
F FV FE+P DA +V L+G +
Sbjct: 264 SRCFGFVNFENPEDAARAVEALNGKK 289
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+YV NL + ++ ++F+++G I + V R+P G + FV F +A + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 316 G 318
G
Sbjct: 390 G 390
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 46.8 bits (106), Expect = 5e-06
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 289 AEDSVRGLDG 318
A D+ +DG
Sbjct: 90 AADAKHHMDG 99
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
++V NL ++ S E+ IFS YG IR V + ++EF D R A+ +++GL+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 328 CGTXNSCRNVKLGP--PKG 378
G R +KL P P+G
Sbjct: 357 AG-----RQLKLAPTCPEG 370
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 300
++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +AE +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 301 VRGLDGTRCCGTXNSCRNVKLG 366
V G+DG G S + +G
Sbjct: 61 VSGMDGKELNGRRVSVKLFGIG 82
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP D
Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90
Query: 289 AEDSVRGLDG 318
A ++ +DG
Sbjct: 91 AAEAKHQMDG 100
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 118 RYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN---PPGFAFVEFEDP 282
R + +L +++VG L + ++ ++ F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 283 RDAEDSVRGLDG 318
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 118 RYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN---PPGFAFVEFEDP 282
R + +L +++VG L + ++ ++ F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 283 RDAEDSVRGLDG 318
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 42.7 bits (96), Expect = 8e-05
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 303
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F D ED+V
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 304 RGLDGT 321
+ + GT
Sbjct: 93 KYISGT 98
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 318
+YV NL N + E+ IF KYG IR + + + G AFV +ED DA+++V L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTX 339
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGG-- 333
Query: 340 NSCRNVKLGPPKG 378
C ++L P G
Sbjct: 334 -KCIKLELSRPGG 345
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTX 339
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGG-- 346
Query: 340 NSCRNVKLGPPKG 378
C ++L P G
Sbjct: 347 -KCIKLELSRPGG 358
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
VGN+ +N YE+ +F ++G+I+ + A GF V + D R A+++ R L G
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280
Query: 334 T 336
T
Sbjct: 281 T 281
Score = 35.1 bits (77), Expect = 0.016
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
V NL ++ S E+ ++ YG ++ + + ++EF D R A ++ GL+G G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 304 RGLDG 318
++G
Sbjct: 164 ESING 168
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 304 RGLDG 318
++G
Sbjct: 164 ESING 168
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---- 246
+++ PF K + E VYV NL + S E+ K+F ++G + + R+
Sbjct: 203 VYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 262
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV FE+ DA +V L+G
Sbjct: 263 SKGFGFVNFENSDDAARAVDALNG 286
Score = 31.9 bits (69), Expect = 0.15
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+YV NL + + ++ + F+ +G I + V R+P G + FV F P +A ++ ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 316 G 318
G
Sbjct: 389 G 389
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 297
D KVYVGNL +K + +FS+ G + + V+R P GF FV F D E
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 298 SVRGLDGT 321
++ L+ +
Sbjct: 234 AIVALNNS 241
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
+VY+GN+ + ++ K+ ++G + V V + F F + DA V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 310 LDG 318
L+G
Sbjct: 137 LNG 139
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-- 252
I++ F KT R + + +Y+ NL + S+ + + F+++G I ++ +A++
Sbjct: 182 IYVGKFMKKT--DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239
Query: 253 --GFAFVEFEDPRDAEDSVRGLDGTR 324
G+AFV F++P DA + ++GT+
Sbjct: 240 CRGYAFVNFDNPEDARRAAETVNGTK 265
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSV 303
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F DA +++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Score = 33.9 bits (74), Expect = 0.036
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +1
Query: 181 KYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
K ++ + SK+G + +++V +N GF ++ FE+ + A + R L G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHG 533
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---- 246
+++ PF + + VYV NL + + ++ F +YG I + V ++
Sbjct: 8 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 67
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV FE+ DA +V L+G
Sbjct: 68 SKGFGFVNFENADDAARAVESLNG 91
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 306
S +YV NL + S ++ +IFS +G + + V R+P G FV F P +A +++
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190
Query: 307 GLDG 318
L G
Sbjct: 191 QLSG 194
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 7e-04
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 300
+S +++V L + + ++FS +G I+ + R+ P GF F+ F+ DA +
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 301 VRGLDG 318
++ LDG
Sbjct: 65 LKSLDG 70
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 39.5 bits (88), Expect = 7e-04
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ + +A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 319 TRCCGTXNSCRNV 357
GT C+ +
Sbjct: 76 ANLNGTNELCKRI 88
Score = 33.1 bits (72), Expect = 0.063
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 142 CK-VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
CK ++VG +G N SK ++ + FSK+G I + R AF+++ + DA
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDA 298
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 142 CKVYVGNLGTNA-SKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
C V V NL ++ + ++ +FS YGNI + + RN P A V+ D AE +V L G
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
Query: 319 TRCCG 333
G
Sbjct: 305 AMLFG 309
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.5 bits (88), Expect = 7e-04
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Frame = +1
Query: 91 PFQLKT---KMSRYREWDLSC----KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-- 243
P Q+K ++ R D SC K++VG L N S+ E+ +FS+YG I+++ + R
Sbjct: 85 PLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGS 144
Query: 244 --NPPGFAFVEFEDPRDAEDSVRGLDG 318
G F+++E A ++ L+G
Sbjct: 145 LQTSKGCLFLKYESKEQAVAAMEALNG 171
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLD 315
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D DA ++ R ++
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMN 109
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +1
Query: 100 LKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAF 264
+ + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 265 VEFEDPRDAEDSVRGLDGTRCCG 333
+ +ED R +V L+G G
Sbjct: 82 LAYEDQRSTILAVDNLNGALVLG 104
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 312
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F A +++ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 313 DG 318
+G
Sbjct: 268 NG 269
Score = 33.5 bits (73), Expect = 0.048
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV 231
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +1
Query: 97 QLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFA 261
QL + S+ ++W K+ + NL A +I +FS G + +V++ +N P GFA
Sbjct: 320 QLGGEGSKAQKW----KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFA 375
Query: 262 FVEFEDPRDAEDSVRGLDG 318
FV+F +DA ++++ +G
Sbjct: 376 FVKFTCKKDAANAIKKFNG 394
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 315
VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R A+D++ +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 316 G 318
G
Sbjct: 69 G 69
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
+Y+G + + EI FS++G ++ V VARN F F++FEDP AE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
V NL + S ++ IF YG I+ + N FVEF D R A+ +++ L+ T G
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FS+YG I+++ + R G F+++E A ++
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 304 RGLDG 318
L+G
Sbjct: 158 EALNG 162
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 109 KMSRYREWDLSC-KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEF 273
K+ + D C K++V N+ A+K E+ ++FS +G I+++ + + G+AFVEF
Sbjct: 657 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716
Query: 274 EDPRDAEDSVRGLDGTRCCG 333
++A ++ + L T G
Sbjct: 717 VTKQEALNAKKALASTHFYG 736
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
+VYVGNL + +FS+ G + V + GF FV ++ ++ +++++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 310 LDGTRCCGTXNSCRNVKLGPPK 375
LDG G + PP+
Sbjct: 265 LDGADLDGRQIRVSEAEARPPR 286
Score = 31.1 bits (67), Expect = 0.25
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 310 LDGTRCCGTXNSCRNVKLGPP 372
+G G V GPP
Sbjct: 152 FNGYELDGRP---LRVNAGPP 169
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
++VG + + ++ + FS++G + +V + G FV+F D + AED++ L+GT
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFE 276
+++R+ E +Y+ NL + ++ ++FS+YGN+ + V NP GF FV +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 277 DPRDAEDSVRGLDG 318
+P +A ++ ++G
Sbjct: 381 NPEEALRALSEMNG 394
Score = 35.1 bits (77), Expect = 0.016
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315
VYV NL + E+ K F K+G I + V R+ G F FV FE A +V ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 316 G 318
G
Sbjct: 291 G 291
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 315
+Y G+L ++ + +F N+ +V V R+ G+A++ F +P DA ++ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 316 GT 321
T
Sbjct: 111 YT 112
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V+VG L + + + +FS+YG I +V + FV+F + AE+++R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 328 CGT 336
GT
Sbjct: 322 GGT 324
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315
VYV NL + E+ K F KYG+I + V ++ G F FV F P A +V ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 316 G 318
G
Sbjct: 287 G 287
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFE 276
++SR+ + S +Y+ NL + + ++ ++FS+YGN+ + V N GF FV +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 277 DPRDAEDSVRGLDG 318
+P +A +++ ++G
Sbjct: 377 NPEEALLAMKEMNG 390
Score = 33.5 bits (73), Expect = 0.048
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 315
+YVG+L + ++ + +F++ + N+ V R+ G+A+V F +P DA ++ L+
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R +D + ++YVGNL + + ++FS++G + + V + GF FV+ + +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 289 AEDSVRGLDG 318
++ LDG
Sbjct: 261 VNVAIAALDG 270
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.7 bits (81), Expect = 0.005
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E +A +++G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 310 LDG 318
+ G
Sbjct: 138 MHG 140
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 253 GFAFVEFEDPRDAEDSVRGLDGT 321
G+AFV FED RDAED++R D T
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNT 32
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E ++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
++V L +S+ +I + F YG I+ V + + P G+AF+E+ RD + + +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 313 DGTRCCG 333
DG + G
Sbjct: 200 DGQKIDG 206
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.9 bits (79), Expect = 0.009
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
S VYV NL + + +FS+YG + +V V R+ GF FV F +P +A+ ++
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 307 GLDG 318
L G
Sbjct: 261 SLCG 264
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 318
+YV NL ++ + + ++F +G+I + V GF FV+F+ + A + L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 319 TRCCG 333
+ G
Sbjct: 174 SMVYG 178
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + ++ + +IF YG I + V GF FV F + +++ + R L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 316 G 318
G
Sbjct: 366 G 366
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLG---TNASKYEIXKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 312
++VG+L T+A+ Y+ +FS + R +W + GF FV F + +DA+ ++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 313 DG 318
+G
Sbjct: 206 NG 207
Score = 33.1 bits (72), Expect = 0.063
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 139 SCK-VYVGNLGTNASKYEIXKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
+C+ VYVGN+ T ++ + +IF+ G + + + ++ + FV + D R A ++ L
Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116
Query: 313 DGTRCCG 333
+G G
Sbjct: 117 NGRHLFG 123
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 291
VYVGNL ++ ++ + F G I V V R+ GF FV + +A
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNTHPEA 315
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 35.9 bits (79), Expect = 0.009
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
++V NL + + +F +Y + V + PG AFVEF D + +++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.012
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 324
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 325 CCGTXNSCRNVKLGP 369
G + + K GP
Sbjct: 82 VDGREITVQFAKYGP 96
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.5 bits (78), Expect = 0.012
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 324
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 325 CCGTXNSCRNVKLGP 369
G + + K GP
Sbjct: 82 VDGREITVQFAKYGP 96
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.5 bits (78), Expect = 0.012
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R ++ + +VYVGNL + + ++FS++G + V + GF FV D +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 289 AEDSVRGLDGTRCCGTXNSCRNVKLGPPK 375
+++ LDG G + PP+
Sbjct: 298 LNEAISALDGQNLEGRAIRVNVAEERPPR 326
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.012
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 303
S K++VG + + ++ + + FSKYG + + V R GFAFV F +A +++
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 304 RGLDG 318
+ LDG
Sbjct: 93 Q-LDG 96
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.5 bits (78), Expect = 0.012
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
++VG L + ++ ++ + FS +G + +V + G FV+F + + AE+++ L+GT
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARNPP---GFAFVEFEDPRDAEDSVRG 309
+++VG L + ++ + FS++G+I + + + R+ GF F+ F D R ++S+R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 310 LDG 318
+ G
Sbjct: 68 MHG 70
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.1 bits (77), Expect = 0.016
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+E A+ +V
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 304 RGLDG 318
+ G
Sbjct: 66 KLFSG 70
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NLG N ++ E+ ++ S+Y + + AR AF +FE+ A D++ L G
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
+++VG+L AS+ ++ K+F G + V + +NP G AF+ F A+ +V+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 310 L 312
L
Sbjct: 275 L 275
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.1 bits (77), Expect = 0.016
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V +L N ++ + +IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 304 RGLDGTRCCG 333
+DG + G
Sbjct: 157 LYMDGAQIDG 166
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.1 bits (77), Expect = 0.016
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V +L N ++ + +IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 304 RGLDGTRCCG 333
+DG + G
Sbjct: 157 LYMDGAQIDG 166
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.021
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F ++ +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 310 LDG 318
L+G
Sbjct: 326 LNG 328
Score = 29.9 bits (64), Expect = 0.59
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 205 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
SKYG + +++V +N GF ++ F+ A + R +
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 34.7 bits (76), Expect = 0.021
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 303
S K+++G L + + + FS +G + V +A + GF FV+F + DA +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 304 RGLDGTRCCG 333
+DG G
Sbjct: 100 DAMDGKGLLG 109
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/62 (27%), Positives = 38/62 (61%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++VG L ++ + ++ + FS++G I +V + G FV+F + +AE+++ L+
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362
Query: 316 GT 321
GT
Sbjct: 363 GT 364
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.027
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FAFVEFEDPRDAEDSVRGLDGTRCCGTXNSCRNVKLGPPKG 378
+AFVEF DPRDA+D+ LDG G+ + G P+G
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITV-EASRGAPRG 44
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 34.3 bits (75), Expect = 0.027
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 30.7 bits (66), Expect = 0.34
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276
K++VG + + ++ E+ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 34.3 bits (75), Expect = 0.027
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 30.7 bits (66), Expect = 0.34
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276
K++VG + + ++ E+ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 34.3 bits (75), Expect = 0.027
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 34.3 bits (75), Expect = 0.027
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.9 bits (74), Expect = 0.036
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFED 279
D + K++VG L + E K F KYG I + + ++ P GF FV + D
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 33.9 bits (74), Expect = 0.036
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 256 FAFVEFEDPRDAEDSVRGLDGTRCCGTXNSCRNVKLGPPKG 378
+AFVEF DPRDA+D+ LDG G+ + G P+G
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITV-EFSRGAPRG 44
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.9 bits (74), Expect = 0.036
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 306
K++VG + S+ + + FS+YG + VA+ P GF FV F + D ++R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.9 bits (74), Expect = 0.036
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
C++YV N+ + ++ +F +G + +V V+RNP G +V A+ ++
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 307 GLDGTRCCGTXNSCR-NVKLGP 369
LDGT G R +V + P
Sbjct: 168 SLDGTEVGGREMRVRYSVDMNP 189
Score = 25.8 bits (54), Expect = 9.6
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---- 255
+P L + + ++ KVYVGNL + FSK+G I + V +
Sbjct: 194 NPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNR 253
Query: 256 -FAFVEFE--DPRDAEDSVRG 309
FAF+ F + RDA S G
Sbjct: 254 VFAFLSFTSGEERDAALSFNG 274
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.5 bits (73), Expect = 0.048
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 309
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 310 L 312
L
Sbjct: 181 L 181
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.5 bits (73), Expect = 0.048
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 309
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 310 L 312
L
Sbjct: 181 L 181
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 33.5 bits (73), Expect = 0.048
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED A +++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 33.5 bits (73), Expect = 0.048
Identities = 16/62 (25%), Positives = 38/62 (61%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++VG L ++ + ++ + F+++G I +V + G FV+F + +AE+++ L+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360
Query: 316 GT 321
GT
Sbjct: 361 GT 362
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.063
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE A ++ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 316 G 318
G
Sbjct: 79 G 79
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.063
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G + + + + + FS +G + V V R P GF FV F DP
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.1 bits (72), Expect = 0.063
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
++ K+Y GNL N + +I + N V V N GFAFV + D
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 301 VRGLDGTRCCG 333
+ LDGT G
Sbjct: 143 IDNLDGTEYLG 153
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 32.7 bits (71), Expect = 0.083
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSV 303
S K+++G + + + + + F+KYG + + V GF FV F A ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 304 RGLDG 318
+ LDG
Sbjct: 99 QALDG 103
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 32.7 bits (71), Expect = 0.083
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
+++G+L + + FS+ G + +V V RN P G+ F+EF AE +++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 313 DGTRCCGT 336
+GT+ GT
Sbjct: 86 NGTQMPGT 93
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.7 bits (71), Expect = 0.083
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + +F++ G + V + GF FV ++ + ++
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 310 LDGTRCCGTXNSCRNVKLGPPKG 378
L+G G + PP+G
Sbjct: 310 LNGADLDGRQIRVSEAEARPPRG 332
Score = 31.1 bits (67), Expect = 0.25
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 310 LDGTRCCGTXNSCRNVKLGPP 372
+G G V GPP
Sbjct: 160 FNGYEFEGRP---LRVNAGPP 177
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.7 bits (71), Expect = 0.083
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + +F++ G + V + GF FV ++ + ++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 310 LDGTRCCGTXNSCRNVKLGPPKG 378
L+G G + PP+G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
Score = 31.1 bits (67), Expect = 0.25
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 310 LDGTRCCGTXNSCRNVKLGPP 372
+G G V GPP
Sbjct: 160 FNGYEFEGRP---LRVNAGPP 177
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
D+ + +VG L + F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 298 SVRGLDG 318
++ G++G
Sbjct: 65 AIEGMNG 71
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
D+ + +VG L + F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 298 SVRGLDG 318
++ G++G
Sbjct: 65 AIEGMNG 71
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 154 VGNLGTNA--SKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
V N G +A + + ++F+ + + + P GF F+ FE DA+ +++ L+G
Sbjct: 73 VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNG 129
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSV 303
S +YVGN+ + E+ + F G + V + + P GFA+VEF + ++S+
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL 160
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 297
KV+VG L + K + F KYG+I + R G+ FV F+D + A ED
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 298 SVRGLDGTR 324
S ++G R
Sbjct: 78 STPIINGRR 86
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.11
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 312
+YV NL + + +I +FS +G + V V R G AFV + DA + R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 313 D 315
D
Sbjct: 119 D 119
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 306
VYV NL ++ S EI + F +G I+ V ++ G +AFVEFED E++++
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 306
VYV NL ++ S EI + F +G I+ V ++ G +AFVEFED E++++
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K++VG + + ++ + F+ YG + V R+ P GF FV F DP
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 318
+++GNLG N ++ E+ + S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSC--KVYVGNLG---TNASKYEIXKIFSKYGNIRNVWVAR 243
IF P ++ + + D S ++VG+L T+A+ ++ F+ + R +W +
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQK 184
Query: 244 N--PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV F + +DA+ ++ ++G
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNG 211
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 291
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
K+++G + + + + + F KYG++ + R+ GF F+ F DP AE
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 294
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194
Query: 295 DSVRGLDGT 321
+++ L GT
Sbjct: 195 EAL-SLGGT 202
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
V V NL + + ++ ++F +G + V+VA + GF FV F DA+ ++ L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 313 DG 318
+G
Sbjct: 275 NG 276
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.25
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
+S K++VG L + + F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 301 VRGLDGTRCCG 333
++ +DG G
Sbjct: 93 IKEMDGKELNG 103
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.25
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
+S K++VG L + + F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 301 VRGLDGTRCCG 333
++ +DG G
Sbjct: 93 IKEMDGKELNG 103
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
NL S + IF YG ++ V FVEF D RDA ++R ++G
Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.1 bits (67), Expect = 0.25
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 294
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181
Query: 295 DSVRGLDGT 321
S L GT
Sbjct: 182 -SALSLGGT 189
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 30.7 bits (66), Expect = 0.34
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
VYVG L S+ + ++F + G + NV+V ++ + F+E+ DA+ +++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 313 D 315
+
Sbjct: 87 N 87
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-WVARNPPGFAFVEF 273
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 0.44
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
VYVGN+ + E+ F G + V + + P GFA+VEF + +++++
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ 147
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 0.44
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
VYVGN+ + E+ F G + V + + P GFA+VEF + +++++
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ 147
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGT 321
++ ++G+
Sbjct: 63 AIEEMNGS 70
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCG 333
++ ++G G
Sbjct: 63 AIEEMNGKELDG 74
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCG 333
++ ++G G
Sbjct: 63 AIEEMNGKELDG 74
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCG 333
++ ++G G
Sbjct: 63 AIEEMNGKELDG 74
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
YG++R V + R G V F D RDA+ +VR + G
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
NL S + +IF YG I+ + FVEF D RDA + ++G G
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGG 276
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V + ++++ + + FS+YG + V V + P GFA+V F +AE ++
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 304 RGLD 315
L+
Sbjct: 80 LELN 83
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.3 bits (65), Expect = 0.44
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP----RDAED 297
KV+VG L + + F +YG I V + G+ FV F DP R D
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 298 SVRGLDGTRCCGTXNSCRNVKLGPPK 375
+DG R +C LG P+
Sbjct: 85 PTPIIDGRRA-----NCNLASLGRPR 105
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.3 bits (65), Expect = 0.44
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 94 FQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN--PPGFA 261
F+L+ K+ R + +YV NL + ++ ++FS++G I + V V N G
Sbjct: 208 FELE-KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVG 266
Query: 262 FVEFEDPRDAEDSVRGLDG 318
FVEF +A ++ ++G
Sbjct: 267 FVEFSTSEEASKAMLKMNG 285
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
V+VGN+ + E+ + F G + V + + P GFA+VEF + +++++
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ 150
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP 249
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 0.59
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
+YV L T + ++ F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 313 D 315
+
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.9 bits (64), Expect = 0.59
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
+YV L T + ++ F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 313 D 315
+
Sbjct: 133 N 133
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.9 bits (64), Expect = 0.59
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D +++
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320
Query: 310 LDGTRCCG 333
LD CG
Sbjct: 321 LDQQVICG 328
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 0.59
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 309
KVY GNLG N + + F + V RN GF F+ FE + + ++
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 310 LDGTRCCG 333
++G G
Sbjct: 280 MNGVEVEG 287
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + E+ +IF + G + +V V GF FV +A+++++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 310 LDGTRCCG 333
+ ++ G
Sbjct: 177 FNSSQIGG 184
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 300
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 301 VRGLDGTRCCG 333
+ +DG G
Sbjct: 93 ISEMDGKELNG 103
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 300
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 301 VRGLDGTRCCG 333
+ +DG G
Sbjct: 93 ISEMDGKELNG 103
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G + + ++ + + FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G + + ++ + + FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 291
KV+VG L + + F +YG+I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 297
D + ++G L S + F KYG++ V + GF F+ F++ + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 298 SVRGLDG 318
++ ++G
Sbjct: 64 AIAAMNG 70
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 309
+++VG L ++ +I ++ +G +R + + N G+AF ++DP + +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 310 LDGTR 324
L+G +
Sbjct: 436 LNGIK 440
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSC--KVYVGNLG---TNASKYEIXKIF----SKYGNIRNV 231
IF P ++ + + D S ++VG+L T+A+ ++ F S Y + R +
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVM 184
Query: 232 WVARN--PPGFAFVEFEDPRDAEDSVRGLDG 318
W + GF FV F + +DA+ ++ ++G
Sbjct: 185 WDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 291
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -3
Query: 328 SSVFHQVHEQSLQHHGGLRILQMQIRADFELPIRYVCYRI 209
+ H +H+ S + HG L+ + + DFE + C +
Sbjct: 494 AQALHYIHQSSAKFHGNLKSTNILLGHDFEACVTDYCLSV 533
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAE 294
+ IRN+++ N G AFV+F +D++
Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +1
Query: 82 FIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----- 246
F+ P Q +++ + + S ++V L + + F+++G + + V +
Sbjct: 37 FLSP-QAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGY 95
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV + D+ + G+DG
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDG 119
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 208 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDG 318
K+G +V V + P G V F+D RDA+ + ++G
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKY---GNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 312
++VG+L + + FS Y + R +W + GF FV F + +DA+ ++ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 313 DG 318
G
Sbjct: 201 TG 202
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEF 273
VYVGNL S+ ++ + F G I V V R+ GF FV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 312
+YVG L ++ + F +G+I++V + F FV F + DA ++ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 313 DGTRCCG 333
DG G
Sbjct: 75 DGAELYG 81
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 312
++VG L + EI + S+YG ++ + V+ G+ VEF D A G+
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 313 DG 318
+G
Sbjct: 264 NG 265
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
V V NL + ++ ++F +G + VA + GF FV F DA+ ++ L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 313 DGTRCCGTXNSCRNVKLGPPK 375
+G G N V+ PK
Sbjct: 236 NG---YGYDNLILRVEWSTPK 253
>At3g16410.1 68416.m02079 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 619
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFE 276
Y N+R V+V + G AFV+FE
Sbjct: 170 YDNVRKVYVGQAQYGIAFVKFE 191
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 268 EFEDPRDAEDSVRGLDGTRCCGTXNSCRNVKLGPPKG 378
EF DPRDA+D+ LDG G+ + G P+G
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITV-EFSRGAPRG 55
>At3g16400.1 68416.m02077 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 470
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFE 276
Y N+R V+V + G AFV+FE
Sbjct: 21 YENVRKVYVGQAQYGIAFVKFE 42
>At2g33070.1 68415.m04055 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 471
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSV 303
Y +R V+V + G AFV+FE +++ V
Sbjct: 21 YDGVRKVYVGQGEDGIAFVKFEYVNGSQEVV 51
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +1
Query: 151 YVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGLD 315
+V L + + ++ IFSK+GN+ + + F FV FE+ + D++ +D
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 274 EDPRDAEDSVRGLD 315
ED RDAED++R LD
Sbjct: 2 EDERDAEDAIRALD 15
>At2g44490.1 68415.m05531 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 560
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 187 EIXKIFSKYGNIRN--VWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
E ++F K +I+N + +A NP + + DP D E R +D
Sbjct: 232 EAVEVFRKCDHIKNGQIGIAHNPLWYEPYDPSDPDDVEGCNRAMD 276
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIR 225
K+Y+ NL S +I ++FS+ G+++
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLK 135
>At3g16390.1 68416.m02075 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 467
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAE 294
Y N+ V+V + G AFV+FE +E
Sbjct: 21 YDNVTKVYVGQGQYGIAFVKFEYANGSE 48
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFED 279
V+VG L + + + +FS+YG I +V + FV+F +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSE 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,168,834
Number of Sequences: 28952
Number of extensions: 143848
Number of successful extensions: 631
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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