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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M13
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    37   0.003
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    33   0.027
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    33   0.036
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    32   0.062
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    32   0.083
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    28   1.0  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   5.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   5.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   7.2  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    25   7.2  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   9.5  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   9.5  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +2

Query: 221 YHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCV 400
           YH   HG       +YVGNL W  +D+++ +  +D+G      + +      G+SKGF V
Sbjct: 270 YHAYPHGPCSDC--IYVGNLPWATSDRNLLDLFTDIGSVIRARIAY---EPTGRSKGFGV 324

Query: 401 ISLGSDQSVRMVMERLS 451
           +   ++      +E+L+
Sbjct: 325 VQFENENDAASSIEKLN 341


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +2

Query: 197 EETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 376
           E    NA    P +   G+ F   +G L W  TD  + +     G  +  D     +   
Sbjct: 146 ESNEDNAEETSPFNREDGKMF---IGGLNWETTDDSLRDYFEQFG--EVLDCTVMRDSTT 200

Query: 377 GQSKGFCVISLGSDQSVRMVMER 445
           G+S+GF  ++  + + V  VM +
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSK 223


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +2

Query: 236 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS 415
           H  +     +Y+GNL +   + DI    S+ G  +  D+    ++  G+SKGF  +    
Sbjct: 24  HQDYSDSAYIYIGNLDFDLNEDDILCVFSEFG--EPVDINLVRDKETGKSKGFAFLKYED 81

Query: 416 DQSVRMVMERLS 451
            +S  + ++ ++
Sbjct: 82  QRSTVLAVDNMT 93


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 122 VISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGP 232
           V  APA  PE     P IAP+Q  P +TN +A+Y  P
Sbjct: 296 VTPAPAPAPESEPSKPSIAPSQ--PSKTNVSAAYEKP 330


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +2

Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
           ++Y+ NL     +  +   +   G  D    +  +N A+G SKGFC     +     + +
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFG--DLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368

Query: 440 ERLSXKXIHG 469
             L  K  +G
Sbjct: 369 SGLDGKDTYG 378


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 442
           L+VGNL +  TD D+      VG    + V+       G+ KGF  +      +    ME
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVG--QIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 155 GDGPPIIAPNQHPPEETNGNASYH 226
           G  P        PP E NGN S+H
Sbjct: 271 GSKPKSFKRKHSPPSEENGNLSFH 294


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +2

Query: 113 YDDVISAPASKPEDGDGPPIIAPNQH-----PPEETNGNASYHG 229
           +D   S P+S PE+G  P  +  N H     P   TN  +  HG
Sbjct: 269 FDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHG 312


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 25/138 (18%), Positives = 48/138 (34%)
 Frame = +2

Query: 59  IXSDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVH 238
           + SD N  +E    +         +  ++PE     P  A        T  NAS      
Sbjct: 14  VESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPS 73

Query: 239 GHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSD 418
           G       LYVG L    T+  +    + +G      ++   +    +S G+  ++  + 
Sbjct: 74  GTAPTSASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTRRSLGYAYVNFHNM 131

Query: 419 QSVRMVMERLSXKXIHGQ 472
           +     ++ L+   I G+
Sbjct: 132 EDGEKALDELNYTLIKGR 149


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 126 ITSSYKSTFSPANSSWRLKSDXISVGV 46
           ++S  KSTF  A  +W+ KSD + + +
Sbjct: 896 LSSQPKSTFRRAVENWKYKSDYLQLNL 922


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQ 421
           +YVGNL+++ T++ I    S  G  + + +    +R      GFC +    +Q
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCG--EIRRIIMGVDRFTKTPCGFCFVEYFENQ 84


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 128  SAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLY-VGNLTWWATDQD 304
            S PA   EDG     I+ +    ++  G+     P   HH    + Y V + T+     D
Sbjct: 783  SIPAIVSEDGADSDTISVSDDKDKKVEGHRPSQDPTFSHH----EYYPVISTTYPFFHVD 838

Query: 305  IANAISDVGVSDFQDVKF 358
            + +A+ D+      DV +
Sbjct: 839  VTSAVVDIQYRHVLDVNY 856


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 278 LTWWATDQDIANAISDV 328
           + W A DQD+ NA+ D+
Sbjct: 616 IDWQAADQDVENALKDL 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,899
Number of Sequences: 5004
Number of extensions: 51127
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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