Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.003
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.027
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.036
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 32 0.062
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.083
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.0
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 5.4
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 5.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 5.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 7.2
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 25 7.2
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 9.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 9.5
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 221 YHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCV 400
YH HG +YVGNL W +D+++ + +D+G + + G+SKGF V
Sbjct: 270 YHAYPHGPCSDC--IYVGNLPWATSDRNLLDLFTDIGSVIRARIAY---EPTGRSKGFGV 324
Query: 401 ISLGSDQSVRMVMERLS 451
+ ++ +E+L+
Sbjct: 325 VQFENENDAASSIEKLN 341
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.027
Identities = 20/83 (24%), Positives = 34/83 (40%)
Frame = +2
Query: 197 EETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 376
E NA P + G+ F +G L W TD + + G + D +
Sbjct: 146 ESNEDNAEETSPFNREDGKMF---IGGLNWETTDDSLRDYFEQFG--EVLDCTVMRDSTT 200
Query: 377 GQSKGFCVISLGSDQSVRMVMER 445
G+S+GF ++ + + V VM +
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSK 223
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +2
Query: 236 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS 415
H + +Y+GNL + + DI S+ G + D+ ++ G+SKGF +
Sbjct: 24 HQDYSDSAYIYIGNLDFDLNEDDILCVFSEFG--EPVDINLVRDKETGKSKGFAFLKYED 81
Query: 416 DQSVRMVMERLS 451
+S + ++ ++
Sbjct: 82 QRSTVLAVDNMT 93
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 122 VISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGP 232
V APA PE P IAP+Q P +TN +A+Y P
Sbjct: 296 VTPAPAPAPESEPSKPSIAPSQ--PSKTNVSAAYEKP 330
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.083
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++Y+ NL + + + G D + +N A+G SKGFC + + +
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFG--DLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368
Query: 440 ERLSXKXIHG 469
L K +G
Sbjct: 369 SGLDGKDTYG 378
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 442
L+VGNL + TD D+ VG + V+ G+ KGF + + ME
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVG--QIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 155 GDGPPIIAPNQHPPEETNGNASYH 226
G P PP E NGN S+H
Sbjct: 271 GSKPKSFKRKHSPPSEENGNLSFH 294
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +2
Query: 113 YDDVISAPASKPEDGDGPPIIAPNQH-----PPEETNGNASYHG 229
+D S P+S PE+G P + N H P TN + HG
Sbjct: 269 FDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHG 312
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/138 (18%), Positives = 48/138 (34%)
Frame = +2
Query: 59 IXSDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVH 238
+ SD N +E + + ++PE P A T NAS
Sbjct: 14 VESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPS 73
Query: 239 GHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSD 418
G LYVG L T+ + + +G ++ + +S G+ ++ +
Sbjct: 74 GTAPTSASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 419 QSVRMVMERLSXKXIHGQ 472
+ ++ L+ I G+
Sbjct: 132 EDGEKALDELNYTLIKGR 149
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 126 ITSSYKSTFSPANSSWRLKSDXISVGV 46
++S KSTF A +W+ KSD + + +
Sbjct: 896 LSSQPKSTFRRAVENWKYKSDYLQLNL 922
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQ 421
+YVGNL+++ T++ I S G + + + +R GFC + +Q
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCG--EIRRIIMGVDRFTKTPCGFCFVEYFENQ 84
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +2
Query: 128 SAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLY-VGNLTWWATDQD 304
S PA EDG I+ + ++ G+ P HH + Y V + T+ D
Sbjct: 783 SIPAIVSEDGADSDTISVSDDKDKKVEGHRPSQDPTFSHH----EYYPVISTTYPFFHVD 838
Query: 305 IANAISDVGVSDFQDVKF 358
+ +A+ D+ DV +
Sbjct: 839 VTSAVVDIQYRHVLDVNY 856
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 278 LTWWATDQDIANAISDV 328
+ W A DQD+ NA+ D+
Sbjct: 616 IDWQAADQDVENALKDL 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,899
Number of Sequences: 5004
Number of extensions: 51127
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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