BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_M13 (651 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.003 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.027 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.036 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 32 0.062 SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.083 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.0 SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 26 5.4 SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 5.4 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 5.4 SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 7.2 SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 25 7.2 SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 9.5 SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 9.5 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 36.7 bits (81), Expect = 0.003 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 221 YHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCV 400 YH HG +YVGNL W +D+++ + +D+G + + G+SKGF V Sbjct: 270 YHAYPHGPCSDC--IYVGNLPWATSDRNLLDLFTDIGSVIRARIAY---EPTGRSKGFGV 324 Query: 401 ISLGSDQSVRMVMERLS 451 + ++ +E+L+ Sbjct: 325 VQFENENDAASSIEKLN 341 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 33.5 bits (73), Expect = 0.027 Identities = 20/83 (24%), Positives = 34/83 (40%) Frame = +2 Query: 197 EETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 376 E NA P + G+ F +G L W TD + + G + D + Sbjct: 146 ESNEDNAEETSPFNREDGKMF---IGGLNWETTDDSLRDYFEQFG--EVLDCTVMRDSTT 200 Query: 377 GQSKGFCVISLGSDQSVRMVMER 445 G+S+GF ++ + + V VM + Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSK 223 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 33.1 bits (72), Expect = 0.036 Identities = 16/72 (22%), Positives = 34/72 (47%) Frame = +2 Query: 236 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS 415 H + +Y+GNL + + DI S+ G + D+ ++ G+SKGF + Sbjct: 24 HQDYSDSAYIYIGNLDFDLNEDDILCVFSEFG--EPVDINLVRDKETGKSKGFAFLKYED 81 Query: 416 DQSVRMVMERLS 451 +S + ++ ++ Sbjct: 82 QRSTVLAVDNMT 93 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 32.3 bits (70), Expect = 0.062 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +2 Query: 122 VISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGP 232 V APA PE P IAP+Q P +TN +A+Y P Sbjct: 296 VTPAPAPAPESEPSKPSIAPSQ--PSKTNVSAAYEKP 330 >SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 31.9 bits (69), Expect = 0.083 Identities = 16/70 (22%), Positives = 29/70 (41%) Frame = +2 Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439 ++Y+ NL + + + G D + +N A+G SKGFC + + + Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFG--DLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368 Query: 440 ERLSXKXIHG 469 L K +G Sbjct: 369 SGLDGKDTYG 378 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 28.3 bits (60), Expect = 1.0 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +2 Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 442 L+VGNL + TD D+ VG + V+ G+ KGF + + ME Sbjct: 230 LFVGNLDFETTDADLKEHFGQVG--QIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287 >SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schizosaccharomyces pombe|chr 2|||Manual Length = 313 Score = 25.8 bits (54), Expect = 5.4 Identities = 10/24 (41%), Positives = 11/24 (45%) Frame = +2 Query: 155 GDGPPIIAPNQHPPEETNGNASYH 226 G P PP E NGN S+H Sbjct: 271 GSKPKSFKRKHSPPSEENGNLSFH 294 >SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 855 Score = 25.8 bits (54), Expect = 5.4 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +2 Query: 113 YDDVISAPASKPEDGDGPPIIAPNQH-----PPEETNGNASYHG 229 +D S P+S PE+G P + N H P TN + HG Sbjct: 269 FDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHG 312 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 25.8 bits (54), Expect = 5.4 Identities = 25/138 (18%), Positives = 48/138 (34%) Frame = +2 Query: 59 IXSDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVH 238 + SD N +E + + ++PE P A T NAS Sbjct: 14 VESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPS 73 Query: 239 GHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSD 418 G LYVG L T+ + + +G ++ + +S G+ ++ + Sbjct: 74 GTAPTSASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTRRSLGYAYVNFHNM 131 Query: 419 QSVRMVMERLSXKXIHGQ 472 + ++ L+ I G+ Sbjct: 132 EDGEKALDELNYTLIKGR 149 >SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 942 Score = 25.4 bits (53), Expect = 7.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 126 ITSSYKSTFSPANSSWRLKSDXISVGV 46 ++S KSTF A +W+ KSD + + + Sbjct: 896 LSSQPKSTFRRAVENWKYKSDYLQLNL 922 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 25.4 bits (53), Expect = 7.2 Identities = 14/53 (26%), Positives = 26/53 (49%) Frame = +2 Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQ 421 +YVGNL+++ T++ I S G + + + +R GFC + +Q Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCG--EIRRIIMGVDRFTKTPCGFCFVEYFENQ 84 >SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 877 Score = 25.0 bits (52), Expect = 9.5 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Frame = +2 Query: 128 SAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLY-VGNLTWWATDQD 304 S PA EDG I+ + ++ G+ P HH + Y V + T+ D Sbjct: 783 SIPAIVSEDGADSDTISVSDDKDKKVEGHRPSQDPTFSHH----EYYPVISTTYPFFHVD 838 Query: 305 IANAISDVGVSDFQDVKF 358 + +A+ D+ DV + Sbjct: 839 VTSAVVDIQYRHVLDVNY 856 >SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 723 Score = 25.0 bits (52), Expect = 9.5 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = +2 Query: 278 LTWWATDQDIANAISDV 328 + W A DQD+ NA+ D+ Sbjct: 616 IDWQAADQDVENALKDL 632 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,525,899 Number of Sequences: 5004 Number of extensions: 51127 Number of successful extensions: 161 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 161 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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