Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M13
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 37 0.016
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 31 0.81
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 31 1.1
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 2.5
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 2.5
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 28 5.7
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 28 5.7
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 28 7.6
>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/86 (37%), Positives = 45/86 (52%)
Frame = +2
Query: 287 WATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLSXKXIH 466
W TDQ + A+ + GV+D ++KFF+NR NGQSKG I
Sbjct: 55 WTTDQQLTEALQECGVTDLINIKFFDNRTNGQSKG----------------------DIE 92
Query: 467 GQHPXLTLPTKQALNXFESQSKTRST 544
GQ+P +T TKQ L+ FE+Q + + T
Sbjct: 93 GQNPVVTPATKQHLHEFEAQHRAKGT 118
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+LY+GNL + + + +I A + GV + V ++ +G+S+GF + L S + +
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGV---EKVDILRDKESGRSRGFGFVLLQSADQIAPAI 66
Query: 440 ERLSXKXIHGQHPXLTLPTKQALN 511
E+++ + G++ + L + N
Sbjct: 67 EKMNQSSVGGRNITVALALDKTEN 90
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +2
Query: 248 GRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSV 427
G ++ Y+GNL++ +Q + D DVK +R G+ +GF ++ GS + +
Sbjct: 2 GEEYRCYIGNLSYSVDEQALEEKFHGC---DVVDVKVITDRETGRPRGFGFVTFGSKEEM 58
Query: 428 RMVMERLSXKXIHGQ 472
++ + G+
Sbjct: 59 EKAIDEFDGQDFDGR 73
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +2
Query: 305 IANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLS 451
I A+S + V D++ +++ G S+GFC + L + + ++E ++
Sbjct: 424 IQAALSAITVLPIYDIRLIKDKVTGTSRGFCFVELATIEEATQLLELIA 472
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +2
Query: 266 YVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMER 445
Y+GNL++ +Q + D V D V+ +R G+ +GF ++L + ++ ++
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVD---VRVITDRETGRPRGFGFVTLEAKKTRIKPLKN 141
Query: 446 LSXKXIHGQH 475
L+ + H H
Sbjct: 142 LTDRSGHYVH 151
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 164 PPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLYVG 274
P I P+ H E+ +G++ HG HG H + VG
Sbjct: 468 PHAINPHSHGGEDDHGHSHDHGHSHGSHDHSADMAVG 504
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 134 PASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHG 241
PASKP + D ++ P + +++GN SY GP G
Sbjct: 339 PASKPAEYDQSTLVRPTKTHVSQSSGN-SYTGPTAG 373
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 146 PEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQ 262
P D GPP +H + + +HGP G HG+R Q
Sbjct: 281 PPDMHGPP--DRGRHDRGPPHDHRDFHGPPDGPHGQRMQ 317
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 263 LYVGNLTWWATDQDIANAISDVG-VSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++VGN+ + A+++ + S+VG V F+ V F+ R G+ KG+ ++ M
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLV--FD-RETGKPKGYGFCEYKDQETALSAM 83
Query: 440 ERLSXKXIHGQ 472
L+ ++G+
Sbjct: 84 RNLNGYELNGR 94
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++++G L W T++ + + S G V + +G+S+GF ++ S SV V+
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTI----VDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
Query: 440 ERLSXKXIHGQ-HPXLTLPTKQALNXFESQSKTR 538
++ + P ++P ++ E+ SKTR
Sbjct: 107 KKKDHVLDDREIEPKRSVPRDES-GAPEAMSKTR 139
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 65 SDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPN 184
SD N Q+E + + D S P S P +G P++ PN
Sbjct: 330 SDTNSQEETPSNTIGIPSDPESNPQSIPTEGPSKPVV-PN 368
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 137 ASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLYVG 274
+ K + GDG P PNQ + P G+R Q ++G
Sbjct: 867 SDKGKQGDGQPADKPNQSEKGKQGAGQPADKPNQSDKGKRLQTHIG 912
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 65 SDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPN 184
SD N Q+E + + D S P S P +G P++ PN
Sbjct: 975 SDTNSQEETPSNTIGIPSDPESNPQSIPTEGPSKPVV-PN 1013
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 137 ASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLYVG 274
+ K + GDG P PNQ + P G+R Q ++G
Sbjct: 391 SDKGKQGDGQPADKPNQSEKGKQGAGQPADKPNQSDKGKRLQTHIG 436
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 68 DFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETN 208
D ++F G+ +D D I+ ++ + D P I+ ++ P E T+
Sbjct: 374 DMAEVEKFVGKKIDQEMDHITKSLARQQTHDSPAIVVSSELPSEVTD 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,627,843
Number of Sequences: 59808
Number of extensions: 420574
Number of successful extensions: 1470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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