Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M13
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 52 3e-07
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 1e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 1e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 42 3e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 42 3e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 41 6e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 41 8e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 39 0.003
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 39 0.003
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 38 0.004
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 37 0.013
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 37 0.013
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 37 0.013
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.023
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 36 0.031
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 36 0.031
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.094
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 33 0.22
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 33 0.22
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 33 0.22
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.29
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.38
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.38
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.38
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.38
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 31 0.66
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 31 0.66
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 31 0.66
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.88
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 2.0
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 2.0
At2g02220.1 68415.m00159 leucine-rich repeat transmembrane prote... 29 2.0
At1g01770.1 68414.m00096 expressed protein 29 2.0
At1g64790.1 68414.m07346 translational activator family protein ... 29 2.7
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 2.7
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 3.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 3.5
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 29 3.5
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 4.7
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 28 4.7
At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative si... 28 4.7
At3g54960.1 68416.m06094 thioredoxin family protein similar to p... 28 4.7
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 28 4.7
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 4.7
At5g07330.1 68418.m00837 expressed protein 27 8.2
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 8.2
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +2
Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 442
L+VG L WW TD +I + +S G +++KFF+ R +G+SKG+C + + E
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYG--RVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261
Query: 443 RLSXKXIHGQ 472
++ +G+
Sbjct: 262 GMNGFIFNGK 271
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +2
Query: 227 GPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVIS 406
G G G L+VG+L WW TD ++ + G ++VKFF+ +A+G+SKG+C +
Sbjct: 224 GGTGGGGGGGAFLFVGDLHWWTTDAELEAELCKYGA--VKEVKFFDEKASGKSKGYCQVE 281
Query: 407 LGSDQSVRMVMERLSXKXIHGQ 472
+ + L+ +G+
Sbjct: 282 FYDPVAASACKDALNGYPFNGR 303
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+D+ S G D D K +R +G+S+GF ++ ++++R
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 437 MERLSXKXIHGQ 472
+E ++ K + G+
Sbjct: 64 IEEMNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+D+ S G D D K +R +G+S+GF ++ ++++R
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 437 MERLSXKXIHGQ 472
+E ++ K + G+
Sbjct: 64 IEEMNGKELDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+D+ S G D D K +R +G+S+GF ++ ++++R
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 437 MERLSXKXIHGQ 472
+E ++ K + G+
Sbjct: 64 IEEMNGKELDGR 75
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+LYVGNL+W D + N ++ G + + +R +G+SKGF ++L S Q V+ +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQG--KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 440 ERLSXKXIHGQ 472
L+ + G+
Sbjct: 308 NSLNGADLDGR 318
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+LYVGNL+W D + N ++ G + + +R +G+SKGF ++L S Q V+ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQG--KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 440 ERLSXKXIHGQ 472
L+ + G+
Sbjct: 316 NSLNGADLDGR 326
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +2
Query: 203 TNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQ 382
+NGN + +L++G L+W D + +A + G D D K +R G+
Sbjct: 17 SNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGR 74
Query: 383 SKGFCVISLGSDQSVRMVMERLSXKXIHGQH 475
S+GF ++ + + + + K ++G+H
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +2
Query: 203 TNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQ 382
+NGN + +L++G L+W D + +A + G D D K +R G+
Sbjct: 17 SNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGR 74
Query: 383 SKGFCVISLGSDQSVRMVMERLSXKXIHGQH 475
S+GF ++ + + + + K ++G+H
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRH 105
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W +Q I ++ G + D K +R G+SKGF ++ + S+R
Sbjct: 44 YRCFVGGLAWATDEQSIERCFNEFG--EVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTA 101
Query: 437 MERLSXKXIHGQH 475
++R++ + + G++
Sbjct: 102 IDRMNGQELDGRN 114
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+D+ S G D D K +R +G+S+GF ++ ++++R
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 437 MERLS 451
+E ++
Sbjct: 64 IEEMN 68
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/82 (23%), Positives = 41/82 (50%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+L+VG L+W D + A + G + + +R G+S+GF +S + S +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG--EVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 440 ERLSXKXIHGQHPXLTLPTKQA 505
+ + K ++G+ + L T+++
Sbjct: 94 KEMDGKELNGRQIRVNLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/82 (23%), Positives = 41/82 (50%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+L+VG L+W D + A + G + + +R G+S+GF +S + S +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG--EVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 440 ERLSXKXIHGQHPXLTLPTKQA 505
+ + K ++G+ + L T+++
Sbjct: 94 KEMDGKELNGRQIRVNLATERS 115
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/89 (25%), Positives = 43/89 (48%)
Frame = +2
Query: 206 NGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQS 385
+ + Y G G ++YVGNL+W D + + S+ G + + +R +G+S
Sbjct: 187 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG--KVVEARVIYDRDSGRS 244
Query: 386 KGFCVISLGSDQSVRMVMERLSXKXIHGQ 472
KGF ++ S Q V+ ++ L + G+
Sbjct: 245 KGFGFVTYDSSQEVQNAIKSLDGADLDGR 273
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +2
Query: 248 GRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSV 427
G +LYVGNL + T +++ + G DV+ ++ +S+GF +++GS +
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGT--VVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 428 RMVMERLSXKXIHGQHPXLTLP 493
+ M+ + I G+ + P
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFP 192
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++Y GNL W T Q + +A D K R G+S+GF IS S ++V+ +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGD--QPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 440 ERLSXKXIHGQHPXLTLPTKQ 502
++ + G+ L L +++
Sbjct: 278 ATMNGVEVEGRALRLNLASER 298
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/72 (23%), Positives = 39/72 (54%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+ + A + G D D K +R G+S+GF ++ +++++
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYG--DVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 437 MERLSXKXIHGQ 472
+E ++ + + G+
Sbjct: 66 IEGMNGQDLDGR 77
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/72 (23%), Positives = 39/72 (54%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ +VG L W D+ + A + G D D K +R G+S+GF ++ +++++
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYG--DVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 437 MERLSXKXIHGQ 472
+E ++ + + G+
Sbjct: 66 IEGMNGQDLDGR 77
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
F++YVGNL W + S+ G D + +R G+S+GF + + ++ V +
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHG--KVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
Query: 437 MERLSXKXIHGQ 472
+ L + + G+
Sbjct: 265 IAALDGQNLEGR 276
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++Y+GNL W T++DI SD ++ V+ +N+ G+ KG+ + SV + +
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDCVIN---SVRLGKNKETGEFKGYAHVDFKDSVSVAIAL 319
Query: 440 ERLSXKXIHGQ 472
+L + I G+
Sbjct: 320 -KLDQQVICGR 329
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 230 PVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISL 409
PVHG GR +++VG L T+++ N G DV + + +GF I+
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT--IADVVVMYDHNTQRPRGFGFITF 158
Query: 410 GSDQSVRMVMER 445
SD +V V+ +
Sbjct: 159 DSDDAVDRVLHK 170
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 230 PVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISL 409
PVHG GR +++VG L T+++ N G DV + + +GF I+
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT--IADVVVMYDHNTQRPRGFGFITF 158
Query: 410 GSDQSVRMVMER 445
SD +V V+ +
Sbjct: 159 DSDDAVDRVLHK 170
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 230 PVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISL 409
PVHG GR +++VG L T+++ N G DV + + +GF I+
Sbjct: 101 PVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGT--IADVVVMYDHNTQRPRGFGFITF 158
Query: 410 GSDQSVRMVMER 445
SD +V V+ +
Sbjct: 159 DSDDAVDRVLHK 170
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+L+VGNL+W T + +A A + G D + + G+S+G+ + S + +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECG--DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 440 ERLSXKXIHGQ 472
E L + G+
Sbjct: 236 ESLDGFELEGR 246
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+LY GNL + +A I D + +V + NR GQS+GF +++ + + +++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLY--NRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 440 ERL 448
+ L
Sbjct: 144 DNL 146
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
QL+V L+ + TDQ + S G ++ + + + KGF I+ S+ R +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFG--QIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 440 ERLSXKXIHGQ 472
+ L K + G+
Sbjct: 66 KSLDGKIVDGR 76
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+L++G L+W +Q + +A S G + +V+ ++ +G+S+GF + +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFG--EVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 440 ERLSXKXIHGQ 472
+ + K + G+
Sbjct: 100 DAMDGKGLLGR 110
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/71 (19%), Positives = 36/71 (50%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+L++G + + + + A + G + D + +R G+S+GF ++ S ++ +
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYG--EVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 440 ERLSXKXIHGQ 472
+ L + +HG+
Sbjct: 99 QALDGRDLHGR 109
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS-DQSVRMV 436
+L++G L++ T+Q ++ A S G + + +R + +SKGF ++ S D++ + +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCG--QVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 437 ME 442
ME
Sbjct: 93 ME 94
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
++YVGNL+ TD + A S G + D +R +S+GF ++ S +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFS--GYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 440 ERLSXKXIHGQHPXLTL 490
+ K ++G+ + L
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/87 (20%), Positives = 40/87 (45%)
Frame = +2
Query: 245 HGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQS 424
HG LYVG+L + TD + + ++ V V+ + A S G+ ++ +
Sbjct: 42 HGALCSLYVGDLDFNVTDSQLYDYFTE--VCQVVSVRVCRDAATNTSLGYGYVNYSNTDD 99
Query: 425 VRMVMERLSXKXIHGQHPXLTLPTKQA 505
M++L+ ++G+ +T ++ +
Sbjct: 100 AEKAMQKLNYSYLNGKMIRITYSSRDS 126
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS----DQSV 427
+++VG L+ TD+D+ A S G D D + R G+S+GF I+ D+S+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFG--DILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 428 R 430
R
Sbjct: 66 R 66
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/72 (22%), Positives = 34/72 (47%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
F++YVGNL W + + S+ G + + +R G+S+GF +++ +
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHG--KVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 437 MERLSXKXIHGQ 472
+ L + + G+
Sbjct: 302 ISALDGQNLEGR 313
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +2
Query: 236 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS 415
H H R LYVG+L+ T++D+ + S + V V N G+S + I+ S
Sbjct: 14 HQHSSRFGSLYVGDLSPDVTEKDLIDKFS-LNV-PVVSVHLCRNSVTGKSMCYAYINFDS 71
Query: 416 DQSVRMVMERLSXKXIHGQ 472
S M RL+ + G+
Sbjct: 72 PFSASNAMTRLNHSDLKGK 90
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 263 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 442
L+ NL++ D+ N + G + DV+F NR +G +GF + S + + +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAG--EVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +2
Query: 164 PPI-IAPNQHPPEETNGNASYHGPVHGH--HGRRFQLYVGNLTWWATDQDIANAISDVGV 334
PP+ +P P + + G H + +G ++VG+L W + + +A +
Sbjct: 69 PPMPFSPYHQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEE 128
Query: 335 SDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLS 451
+ +K N+ NG S+G+ + S V++ +
Sbjct: 129 REIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
+++YVGNL T + + N S+ G K +S GF ++ S++ V
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKG--KVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
Query: 437 MERLSXKXIHGQ 472
+ L+ + GQ
Sbjct: 235 IVALNNSLLEGQ 246
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 236 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVIS 406
+ H R +++VGNLTW T D+ G D G+SKG+ I+
Sbjct: 5 NNHDTRVTKIFVGNLTWRTTADDLRRYFEQFG--QVVDANVVSETYPGRSKGYGFIT 59
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 31.1 bits (67), Expect = 0.66
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Frame = +2
Query: 200 ETNGNASYHGPVHGHHGRRF----QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFEN 367
+T G H H H +L+VG ++W T + AN G + D +
Sbjct: 43 DTGGIQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFG--EVVDSVIMTD 100
Query: 368 RANGQSKGFCVISLGSDQSVRMVMERLSXKXIHGQHPXLTLPTKQALNXFESQSKTR 538
R G +GF ++ V+E TLP ++ SKTR
Sbjct: 101 RITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTR 157
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 30.7 bits (66), Expect = 0.88
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = +2
Query: 179 PNQHPPEETNGNASYHGPVHGHHG---RRFQLYVGNLTWWATDQDIANAISDVGVSDFQD 349
P +P + + +A P G G + LYV NL + T+ DI S G
Sbjct: 28 PPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFG--KVAR 85
Query: 350 VKFFENRANGQSKGFCVISLGSDQSVRMVMERLSXKXIHGQ 472
V ++R QS+G + S + + K ++G+
Sbjct: 86 VTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGR 126
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/72 (18%), Positives = 36/72 (50%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
++ ++G L W +D+ + +A G + K ++ +G+S+GF I+ +++
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYG--HLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 437 MERLSXKXIHGQ 472
+ ++ + G+
Sbjct: 65 IAAMNGMDLDGR 76
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +2
Query: 254 RFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRM 433
R +LYV NL W A + + + F + G+S G+ +S + +
Sbjct: 193 RHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFAD-PEGRSSGYGFVSFATREEAEN 251
Query: 434 VMERLSXKXIHGQHPXLTLPTKQA 505
+ +L+ K I G+ L + A
Sbjct: 252 AITKLNGKEIMGRPITLKFSLRSA 275
>At2g02220.1 68415.m00159 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1008
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 191 PPEETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENR 370
PP G+ + GP+ G +L+V +L W A I +++S G++ + + NR
Sbjct: 525 PPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLS--GMTSLEALDLSNNR 582
Query: 371 ANG 379
+G
Sbjct: 583 LSG 585
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 FNFTSAT*HGGQRTKILRTRSRMSVSPIFKM*SSLRTEPMVSPK--DSALYLSVQINQSG 431
F S + GGQ T + + +PI + + +++ + D+AL+L+ + + G
Sbjct: 140 FETGSGSSFGGQYCSAGGTSTYLGAAPIVECLEKYQPNVIITSRVADAALFLAPMVYELG 199
Query: 432 W*WN 443
W WN
Sbjct: 200 WNWN 203
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 135 QLRSPRTVTVLPSLLQTSIHLRKLTATPHTTARFTDIMAAVFN 263
Q+ S RT VLP +L +HL H ++ A FN
Sbjct: 1839 QIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEVAGAGFN 1881
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQ 421
++YVGNL W+ + N S G + +R G+++ F +S S +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGT--IVSTRVLHDRKTGRNRVFAFLSFTSGE 264
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
+ L V N+T+ T D+ + G DV +R G S+GF +
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 437 MERLSXKXIHGQ 472
+ERL + + G+
Sbjct: 74 VERLDGRVVDGR 85
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 257 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 436
+ L V N+T+ T D+ + G DV +R G S+GF +
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 437 MERLSXKXIHGQ 472
+ERL + + G+
Sbjct: 74 VERLDGRVVDGR 85
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 496 SRQCKXWMLPVYXLXRKTFHHHPD*LI*TERYNAESFG 383
++Q K + R F HHP LI + RYN ES G
Sbjct: 56 AKQLKITYHKKHGTDRVCFTHHPSSLICSSRYNLESTG 93
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Frame = +2
Query: 176 APNQHPPEETNGNASYHGPVHGHHGRRF--------QLYVGNLTWWATDQDIANAISDVG 331
AP Q PE T G+ + H R +LY+ NL + ++DI ++VG
Sbjct: 51 APYQSAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVG 110
Query: 332 VSDFQDVKFFENRANGQSKG 391
V F +G+SKG
Sbjct: 111 ELKRYTVHF---DRSGRSKG 127
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 220 IPRPGSRTSWPPFSTLRRQPNMVGNGP----RYCERDLGCRCLRFSRCEV 357
IPRPGS +S F T RQ N P Y RD G R+ RC +
Sbjct: 336 IPRPGSSSSPTVFET--RQSNQANPPPPATSDYVVRDTGNCSPRYMRCTI 383
>At4g10120.1 68417.m01655 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase, Zea mays,
PIR2:JQ1329; contains non-consensus (GC) donor splice
site at intron 4
Length = 1050
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 395 RILWTDHWLCSQRTSHLENRRHRHPRS 315
R W +H C SH+E+ R+RHP S
Sbjct: 678 RFSWPEH--CRNYLSHVEHCRNRHPTS 702
>At3g54960.1 68416.m06094 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 579
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 137 ASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLY 268
AS D D + E+++G SYH H H R F+ Y
Sbjct: 28 ASSGSDLDEELAFLAAEESKEQSHGGGSYHEEEHDHQHRDFENY 71
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 239 GHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRA 373
G RRF+++ NL + I N +VG++ F D+ E RA
Sbjct: 58 GEKERRFEIFKDNLKFVEEHSSIPNRTYEVGLTRFADLTNDEFRA 102
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 260 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 439
+++V L W + +A G + +D K ++ +GQSKG+ I S R +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYG--EIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 440 ERLSXK 457
++ K
Sbjct: 187 KQPQKK 192
>At5g07330.1 68418.m00837 expressed protein
Length = 165
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 192 HLRKLTATPHTTARFTDIMAAVFNFTSAT*HGGQRTKILRTRSRMSVSPIF 344
HL+ + T + T + + T+AT +GGQRT ++ +P++
Sbjct: 8 HLKNVVQRLRTYTKATTVPRSKAYSTAATEYGGQRTATTAAATKGDFTPVY 58
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 386 WTDHWLCSQRTSHLENRRHRHPRSRSQYLGPLPTMLG-CRRKVE 258
+T H CS + RH H SR+ LG + ++ G CR+K++
Sbjct: 271 FTSHNNCSGFPWVININRHDHRVSRTSLLGIIDSVCGVCRKKMD 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,814
Number of Sequences: 28952
Number of extensions: 292313
Number of successful extensions: 856
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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