Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_M11
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   150   2e-37
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    91   1e-19
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    78   1e-15
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    30   0.33 
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   2.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   4.1  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  150 bits (363), Expect = 2e-37
 Identities = 67/107 (62%), Positives = 81/107 (75%)
 Frame = +3

Query: 72  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 251
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 252 DEGVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVXLLRL 392
           DEGV KMS+ E+AKLT +PDY YG +G PG+IPPNSTL+FDV LL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 49/106 (46%), Positives = 64/106 (60%)
 Frame = +3

Query: 75  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 254
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 255 EGVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVXLLRL 392
            GVA M      K+T     AYG Q  PG IP NSTL+F+V L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 46/103 (44%), Positives = 56/103 (54%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 257
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 258 GVAKMSVXERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVXLL 386
           G+  M V     +      AYG +  PG IP NS L+FDV LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 5/43 (11%)
 Frame = +2

Query: 503 LKSLYQHYV---YLXW-KYI-YTYAIRKNFILYVVNXFMVRLI 616
           L ++++H+    YL W K+I Y+Y +R+N++LY ++ ++ + +
Sbjct: 337 LYAMFKHWGQDGYLEWLKHIRYSYTLRRNYLLYAMDTYLPKSV 379


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +2

Query: 485 FYHI---LSLKSLYQHYVYLXWKYIY---TYAIRKNFILY 586
           F+HI   L L S YQ++  L W++IY   T   +  FI+Y
Sbjct: 36  FFHINFGLHLLSHYQYWRILLWQFIYWNSTEVFQALFIIY 75


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 201 GKPFKFRIGKSEVIRGWDEGVAKMSVXERAKLTCSPDYAY 320
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDS 188
           V+  ++  GD+  +P +GQT+ +  T    N KK  S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,030
Number of Sequences: 5004
Number of extensions: 51224
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)