Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_M09
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25) 61 9e-10
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23) 58 8e-09
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23) 58 8e-09
SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17) 49 3e-06
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 7.6
>SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)
Length = 101
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/53 (49%), Positives = 40/53 (75%)
Frame = +3
Query: 192 LYAGLIGQLTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDREFILIVIQN 350
+Y I +T+ AR+ VR++D N+L FLR+RSR +EIL+AP+ ++ LIVIQ+
Sbjct: 44 IYLSNIQSMTQMARSAVRDLDPLNDLKFLRIRSRKYEILVAPENDYTLIVIQS 96
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 76 EVEETIKRIQAHKGVMGVVIVNHEGI 153
EVEE +KRI H GV G +I N EG+
Sbjct: 6 EVEEVLKRIINHPGVTGSIITNPEGV 31
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = +3
Query: 162 KAHXIMPLQLLYAGLIGQLTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDREFILIV 341
K+ +P LYA L A + VR+MD NEL F+RVR+ E ++APD E++LIV
Sbjct: 139 KSSMDIPTTQLYASEFAPLAHFAHSAVRDMDPQNELRFIRVRTNKMEFMVAPDNEYLLIV 198
Query: 342 IQ 347
IQ
Sbjct: 199 IQ 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +1
Query: 64 IMAT-EVEETIKRIQAHKGVMGVVIVNHEGIP 156
IM T EVE T++RI H GVMG +++N++G P
Sbjct: 106 IMTTSEVENTLQRISLHPGVMGWLVINNQGEP 137
>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
Length = 160
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = +3
Query: 189 LLYAGLIGQLTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDREFILIVIQN 350
LLYA L + AR+ VR++D N+L+ LRV+SR +EI+IAP E++LIV+Q+
Sbjct: 104 LLYASNCHHLAKLARSTVRDIDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 157
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 67 MATEVEETIKRIQAHKGVMGVVIVNHEGIP 156
MA+ VE +KRIQ+HKGV+G ++VN EG P
Sbjct: 64 MASSVENILKRIQSHKGVIGSIVVNSEGTP 93
>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
Length = 101
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/54 (50%), Positives = 40/54 (74%)
Frame = +3
Query: 189 LLYAGLIGQLTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDREFILIVIQN 350
LLYA L + AR+ VR++D N+L+ LRV+SR +EI+IAP E++LIV+Q+
Sbjct: 45 LLYASNCHHLAKLARSTVRDIDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 98
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 67 MATEVEETIKRIQAHKGVMGVVIVNHEGIP 156
MA+ VE +KRIQ+HKGV+G ++VN EG P
Sbjct: 5 MASSVENILKRIQSHKGVIGSIVVNSEGTP 34
>SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)
Length = 111
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +3
Query: 216 LTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDREFILIVIQNT 353
L E AR +R+ D ++L F RVR+ HE++IAP+ ++ LIVIQ T
Sbjct: 57 LVELARATIRDTDPEDDLRFFRVRTLKHELIIAPEDKYTLIVIQKT 102
>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +3
Query: 195 YAGLIGQLTEKARNVVREMDSTNELTFLRVRSRXHEILIAPDR----EFILIVIQN 350
YA + L AR VR++D ++L LRVR++ HE++IAP+R F ++ +Q+
Sbjct: 43 YANMCKNLASMARGTVRDVDPADDLLILRVRTKEHEVIIAPERTGDGTFFIVALQS 98
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 67 MATEVEETIKRIQAHKGVMGVVIVNHEG 150
MA +VE ++RIQ+HKGV+G ++N EG
Sbjct: 1 MALQVERRLERIQSHKGVLGSAVINPEG 28
>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 79 VEETIKRIQAHKGVMGVVIVNHEGIPTQKLI 171
VE+ + RIQ KGV G++IVN +G+P + +
Sbjct: 265 VEQILDRIQQQKGVTGLIIVNQDGMPIRSTL 295
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 87 NDQEDPSPQRGDGCRHRKPRRYTNSK 164
+D+E PSP R RH+ R++ +SK
Sbjct: 23 SDEEPPSPPRPSPHRHKHSRKHQHSK 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,529
Number of Sequences: 59808
Number of extensions: 350082
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -